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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGATATTACTATGGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttcttgctgtagtctgcttgttcattctatttttcatttatctgttccattccattttgaatttgaaaaagtttatatttctataatgtag

Basic information

species Glycine max
transcript GLYMA07G05170.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G05170.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G50430.2 (Arabidopsis thaliana), 5'ss of exon 5
GTGGATATTACTATGGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaa--tccttcttgctgtagtctgcttgttcattctatttttcatttatctgttccattcc-attttgaatttgaaaaagtttatatttctataatgtag
|||||| |||||||||||| |||||||| ||||| |||||||| || || || |||||||||| ||||  || ||| | ||  ||  | ||   | |   |||   ||   ||  ||||  |||||   |||  | |  |  ||  |  | || ||  |      
GTGGATTTTACTATGGAAAGATCAAGTTCCCTCCAGAATATCCTTACAAGCCACCTGGAATCACgtaagctctttcgttcttcagaattctcacttaaaatatcactctccta--tgttttattcctggtttccaatcaactaaactactgttgctgcag-----

upper sequence: GLYMA07G05170.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G17280.1 (Arabidopsis thaliana), 5'ss of exon 5
GTGGATATTACTATGGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgta-atccttcttgctgtagtctgcttgttcattctatttttcatttatc-tgttccattccattttgaatttgaaaaagtttatatttctataatgtag
|||||| |||||||||||| |||||||||||||| || ||||| || || || || || || | |||  | |   | | |         |   ||     |||  || |   || | ||   | |  ||||  | |  |  || | | | | | | |     ||
GTGGATTTTACTATGGAAAGATCAAGTTTCCTCCCGAGTATCCTTACAAGCCACCAGGGATTACgtatgttccaatggttcctccaaattcagtctcaacattactcttacctcattttttgtccagttttttaatgaaccaaatctttttctgtttgcctcag

upper sequence: GLYMA07G05170.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0002g00280.t01 (Vitis vinifera), 5'ss of exon 6
GTGGATATTACTATGGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttcttgctg-tagtctgcttgttc------attctatttttcatttatctgttccattccattt---tgaatttgaaaaagtttatatttcta----taatgtag----------------
||||||||||||||||||| ||||| |||||||| || ||||||||||||||||| ||||||||||| ||  | ||   | || |    || | |      ||  | | || | |||| | |    |||  | ||   | ||| |    | ||   |  || ||    |||||  |                
GTGGATATTACTATGGAAAGATCAAATTTCCTCCAGAGTATCCATATAAACCTCCAGGAATCAGgtattctgtattctggctacttcaattttcccaagaaatattctgttgcttttagcagcagtattttacttatattaatgtattcatgtagttgcttttaattttaatgacgttttcctctcttgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193518256|gb|FK476597.1|FK476597
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGA
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGA
EST: gi|213589359|gb|DB961692.1|DB961692
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
EST: gi|193367615|gb|FK332077.1|FK332077
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTTGT
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTT-GT
EST: gi|208189947|gb|GD990021.1|GD990021
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
EST: gi|193362954|gb|FK327934.1|FK327934
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGNTCTGTTTGTC
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
EST: gi|120495095|gb|EH223262.1|EH223262
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
EST: gi|24205463|gb|BU964716.1|BU964716
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACACAAAAAGATCTGTTTGTC
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
EST: gi|208045851|gb|GD847707.1|GD847707
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGNTCTGTTTGTC
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
EST: gi|207707971|gb|GD692496.1|GD692496
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
EST: gi|9902562|gb|BE611593.1|BE611593
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACAGAANAAGATCTGTTTGTC
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
EST: gi|7692130|gb|AW760244.1|AW760244
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
EST: gi|298173240|gb|HO020224.1|HO020224
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACA
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACA
EST: gi|298163944|gb|HO013589.1|HO013589
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACA
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACA
EST: gi|120491908|gb|EH220075.1|EH220075
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
EST: gi|193440118|gb|FK408519.1|FK408519
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACAAGAAAA-GATCTGTTTGT
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACA-GAAAAAGATCTGTTTGT
EST: gi|9264559|gb|BE352706.1|BE352706
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
EST: gi|192331929|gb|FK026713.1|FK026713
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC