Sequence
atgc intronic sequence ATGC exonic sequenceGATATGGGAGAGCTTTCAGAAGATGGTCCAGTTGATTGGGAGAGTTTAGATGCCTCAGCATCACATATTGCCAACTTGTTGTCAACAGAGCCAGCTGATGgtaatttcaaggctaaataataattacggttgtttgagtaatctttttacatgaaataagaaggtaaaataattttttattagttaaattcaatttataa...
Basic information
species | Glycine max |
transcript | GLYMA07G03670.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G03670.2 (Glycine max), 5'ss of exon 5
lower sequence: AT1G52700.1 (Arabidopsis thaliana), 5'ss of exon 5
GATATGGGAGAGCTTTCAGAAGATGGTCCAGTTGATTGGGAGAGTTTAGATGCCTCAGCATCACATATTGCCAACTTGTTGTCAACAGAGCCAGCTGATGgtaatttcaaggc----taaataataattacggttgtttgagtaatctttttacatgaaataagaaggtaaaataattttttattagttaaattcaattt-ataa
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GACGTTGGGGAAATTTCTGAAGATGGTCATGATGATTTGGAAGGTTTAGATGCCTCAGCTTCACATATTGCTAACCTTTTGTCCTCTGAACCAGCAGATGgtaagccaaaatcatcttaacttgaattttcgaaaatgtaatatgtattatcacatccatcatatctttagctcaatcattgacttgctcttctgattttgatag
upper sequence: GLYMA07G03670.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0002g06010.t01 (Vitis vinifera), 5'ss of exon 6
GATATGGGAGAGCTTTCAGAAGATGGTCCAGTTGATTGGGAGAGTTTAGATGCCTCAGCATCACATATTGCCAACTTGTTGTCAACAGAGCCAGCTGATGgtaatttcaaggctaaataataattacggttgtttgagtaatctttttacatgaaata----agaaggtaaaataattttttattagttaaattcaatttataa
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GATGTGGGAGAGCTTTCAGATGATGGTCCAGACGATTTGGATGGTTTAGATGCATCAGCAGCACACATTGCAAACTTGTTGTCAACTGAACCTGCTGATGgtaggccattccctagttactcccaagtctaatcttaatacacaatgaagatcttcttgtgtaaaaacttccttaaatttttgtaaaataatttcaaaaa----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192328050|gb|FK021796.1|FK021796EST: TGCCTCAGCATCACATATTGCCAACTTGTTGTCAACAGAGCCAGCTGATG TGAAAGTAGGAATTGGAGGCTTCAGTATGGGTGCTGCAGTAGCTCAATACT
genomic: TGCCTCAGCATCACATATTGCCAACTTGTTGTCAACAGAGCCAGCTGATGgtaatttcaa ... tttgtcacagTGAAAGTAGGAATTGGAGGCTTCAGTATGGGTGCTGCAGTAGCTCAATACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATATGGGAGAGCTTTCAGAAGATGGTCCAGTTGATTGGGAGAGTTTAGATGCCTCAGCATCACATATTGCCAACTTGTTGTCAACAGAGCCAGCTGATGgtaatttcaaggctaaataataattacggttgtttgagtaatctttttacatgaaataagaaggtaaaataattttttattagttaaattcaatttataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT