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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTATTGAAACCGGGAGGCAGGTTCCTTTGCCTTGAACTGAGTCATGTTGGCATTCCTGTATTTAAAGATTTgtaagtatcatttgctttattttgcaaaaatgatgagtattgggggttgacatttgataaggaagatagggaatgatgatatgcattctaatcacatttg...

Basic information

species Glycine max
transcript GLYMA07G03210.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G03210.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv16s0039g01590.t01 (Vitis vinifera), 5'ss of exon 7
GGTATTGAAACCGGGAGGCAGGTTCCTTTGCCTTGAACTGAGTCATGTTGGCATTCCTGTATTTAAAGATTTgtaagtatcatttgctttattttgcaaaaatgatgagtattgggggttgacatttgataaggaagatag--ggaatgatgatatgcattctaatcacatttg-
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GGTACTAAAACGGGGAGGAAGATTCCTTTGCCTTGAGCTCAGCCATGTGGAAATTCCTGTATTTAAGGAGTTgtgagtatcact-gttgcttttcacttatgcaagaactcttatgtacc--caatagattgccttgccacctaggtttttgatacgagaattggctggagtgtt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7028434|gb|AW458217.1|AW458217
EST:     TTCCTTTGCCTTGATCTGAGTCATGTTGGCATTCCTGTATTTAAAGATTT                         GTATGACTATAATTCTATCTCAGTTATTCCATACATGGGTGAGCTGGTTGC
genomic: TTCCTTTGCCTTGAACTGAGTCATGTTGGCATTCCTGTATTTAAAGATTTgtaagtatca ... tctcttgcagGTATGACTATTATTCTTTCTCAGTTATTCCATACATGGGTGAGCTGGTTGC
EST: gi|193439683|gb|FK405886.1|FK405886
EST:     TTCCTTTGCCTTGAACTGAGTCATGTTGGCATTCCTGTATTTAAAGATTT                         GTATGACTATTATTCTTTCTCAGTTATTCCATACATGGGTGAGCTGGTTGC
genomic: TTCCTTTGCCTTGAACTGAGTCATGTTGGCATTCCTGTATTTAAAGATTTgtaagtatca ... tctcttgcagGTATGACTATTATTCTTTCTCAGTTATTCCATACATGGGTGAGCTGGTTGC