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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCTTTGCATTGAACATGCTCTTCAACATACCAGTTTGGGTTGGTGTTCTTCTGACAGGATTCAGTACATTGATCCTCTTAGCATTACAGCAATATGGGgtagttttctatattctatagaatctatacagccctcttccccatgggtacctggcatctttctatgatttgatatgatatagaaattattatattattatatcctgaacaaatcaatggttgacattgcattttctttgttgttaaacag

Basic information

species Glycine max
transcript GLYMA07G02680.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G02680.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G80830.1 (Arabidopsis thaliana), 5'ss of exon 6
AGCCTTTGCATTGAACATGCTCTTCAACATACCAGTTTGGGTTGGTGTTCTTCTGACAGGATTCAGTACATTGATCCTCTTAGCATTACAGCAATATGGGgtagttttctatattctatagaatctatacagccctcttccccatgggtacctggcatctttctatgatttgatatgatatagaaattattatattattatatcctgaacaaatcaatggttgacattgcattttctttgttgttaaacag
||| |||||  ||||||||||||| | |||||| || ||| | ||||||||||||||||| || |||||  |||| ||  | ||| | ||  |||| |||||| |  | |    |||        |  || |  ||  |    | ||     ||   ||||   |   |||| ||| ||| ||                                                                    
AGCTTTTGCTCTGAACATGCTCTTTAGCATACCGGTGTGGATCGGTGTTCTTCTGACAGGCTTAAGTACGCTGATTCTTCTCGCACTTCAAAAATACGGGgtattagtttcatctcttgttctcgttcacggtgcttatatgtaagg-----tgaattcttatgaatgtttggtataatacag--------------------------------------------------------------------

upper sequence: GLYMA07G02680.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G15960.1 (Arabidopsis thaliana), 5'ss of exon 6
AGCCTTTGCATTGAACATGCTCTTCAACATACCAGTTTGGGTTGGTGTTCTTCTGACAGGATTCAGTACATTGATCCTCTTAGCATTACAGCAATATGGGgta-gttttctatattctatagaatctatacagccctcttccccatgggtacctggcatctttctatgatttgatatgatatagaaattattatattattatatcctgaacaaatcaatggttgacattgcattttctttgttgttaaacag
||| ||||| || |||||||| ||||| || || |||||| ||||||||||||| |||||| | ||||||||||| ||  ||||| | || ||||||||||||  |||  ||  || | |    |   ||  ||  |     | ||   |   ||| || ||  | |  ||| |||| || || |                                                                   
AGCATTTGCTTTAAACATGCTATTCAATATCCCGGTTTGGATTGGTGTTCTTCTCACAGGACTTAGTACATTGATTCTTCTAGCACTTCAACAATATGGGgtacatttgttaagttttgt----ttattatggcttttaagtctataaat---tggtattttggt-tctttttatataat-tacag------------------------------------------------------------------

upper sequence: GLYMA07G02680.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0070g00210.t01 (Vitis vinifera), 5'ss of exon 7
AGCCTTTGCATTGAACATGCTCTTCAACATACCAGTTTGGGTTGGTGTTCTTCTGACAGGATTCAGTACATTGATCCTCTTAGCATTACAGCAATATGGGgtagttttctatattctatagaatctatacagccctcttcc-ccatgggtacctggcatctttctatgatttgatatgatatagaaattattatattattatatcctgaacaaatcaatggttgacattgcattttctttgttgttaaacag
||||||||||||||||||||||||||| || || || |||  |||||||||||| |||||  | ||||||||| | ||  |||| ||||||||||||||||||  |   |||||  |  | | || || || |    | |  | ||   |   |||  | |||  ||  |||   |||   || |||     | | || | ||                                                 
AGCCTTTGCATTGAACATGCTCTTCAATATTCCTGTGTGGTGTGGTGTTCTTCTTACAGGGCTTAGTACATTGGTTCTTCTAGCTTTACAGCAATATGGGgtatgtggatatatcttccatattccatgcatctggatgcaactattattgaatggtttatttacatcgtttt-catgcagtaaaaacag--aaagtactgta-------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151402052|gb|EV271865.1|EV271865
EST:     TTCTGACAGGATTCAGTACATTGATCCTCTTAGCATTACAGCAATATGGG                         GTTAGGAAACTTGAATTCTTCATTGCATTTCTAGTATTCACAATTGCTGGT
genomic: TTCTGACAGGATTCAGTACATTGATCCTCTTAGCATTACAGCAATATGGGgtagttttct ... tgttaaacagGTTAGGAAACTTGAATTCTTCATTGCATTTCTAGTATTCACAATTGCTGGT