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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATACTGGCAGAAAAGTGGAAGAGCCAGAGTTGTTAGAGGCAATTCGTTTAACAATTATAAATAATCTTATTCAGTACCACCCGgtaagcttaccaactatcctctttctcgctggaccttaatttggttagaaaccaagaggcagttctcagctaattagatttttcaaactgggtggtcaag

Basic information

species Glycine max
transcript GLYMA07G02580.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G02580.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0018g01780.t01 (Vitis vinifera), 5'ss of exon 5
TGATACTGGCAGAAAAGTGGAAGAGCCAGAGTTGTTAGAGGCAATTCGTTTAACAATTATAAATAATCTTATTCAGTACCACCCGgtaagcttac-caactatcctctttctcgctggaccttaatttggttagaaacca-----agaggcagttctc------agctaattagatttttcaaactgggtggtcaag
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TGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCGgtattcctttgtaaatatttgtttcttggcttgacatgccccttgatagagatctcttgtaagatttgctctctttttaagtttcttaaattttctgaatttg-tggtccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22931562|gb|BU548709.1|BU548709
EST:     GAGGCAATTCGTTTAACAATTATAAATAANCTTATTCAGTACCACCCG                         GAATCAAGTTCCCAGTTAGCATTGGGAGCAGCTTTTGGACTTCTGCCTCCA
genomic: GAGGCAATTCGTTTAACAATTATAAATAATCTTATTCAGTACCACCCGgtaagcttac ... ggtggtcaagGAATCAAGTTCCCAGTTAGCATTGGGAGCAGCTTTTGGACTTCTGCCTCCA