1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGGTCGAAGCGATGCTTTTGCTACCGAGTTTGACCTTGAAGCAGAAGAGTATGTTCCACTTCCCAAGGGAGAGGTTCACAAAAAAAAGGAGATTGTTCAGgtatttaatttgaagaccaatgttatatttatgcaatacctataagatttgataatttagtataattattatatttgaatcctctaattgatgctatgag...
species | Glycine max |
transcript | GLYMA07G02170.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGAGATTGTTCAG GATGTAACCCTACATGATCTTGATGCTGCCAATGCACGACCTCAAGGGGGAEST: gi|18039885|gb|BM308179.1|BM308179
genomic: GGAGATTGTTCAGgtatttaatt ... gttcttaaagGATGTAACCCTACATGATCTTGATGCTGCCAATGCACGACCTCAAGGGGGA
EST: ATGTTCCACTTCCCAAGGGAGAGGTTCACNNNNNNNNGGAGATTGTTCAG GATGTAACCCTACATGATCTTGATGCTGCCAATGCACGACCTCAAGGGGGAEST: gi|151398565|gb|EV268436.1|EV268436
genomic: ATGTTCCACTTCCCAAGGGAGAGGTTCACAAAAAAAAGGAGATTGTTCAGgtatttaatt ... gttcttaaagGATGTAACCCTACATGATCTTGATGCTGCCAATGCACGACCTCAAGGGGGA
EST: ATGTTCCACTTCCCAAGGGAGAGGTTCACNNNNNNNNGGAGATTGTTCAG GATGTAACCCTACATGATCTTGATGCTGCCAATGCACGACCTCAAGGGGGA
genomic: ATGTTCCACTTCCCAAGGGAGAGGTTCACAAAAAAAAGGAGATTGTTCAGgtatttaatt ... gttcttaaagGATGTAACCCTACATGATCTTGATGCTGCCAATGCACGACCTCAAGGGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTCGAAGCGATGCTTTTGCTACCGAGTTTGACCTTGAAGCAGAAGAGTATGTTCCACTTCCCAAGGGAGAGGTTCACAAAAAAAAGGAGATTGTTCAGgtatttaatttgaagaccaatgttatatttatgcaatacctataagatttgataatttagtataattattatatttgaatcctctaattgatgctatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT