Sequence
atgc intronic sequence ATGC exonic sequenceGTTATGGATATGCTGGGACCTAGCCTCTGGGACGTTTGGAATAATAGCAATCATCAgtaagtccttgaaattatgtcagatatgaataaaattgtattctttgtagttgattttgactttcagttgctgtgctaatgtgtttttctgaattccag
Basic information
species | Glycine max |
transcript | GLYMA07G01890.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G01890.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g54100.1 (Oryza sativa), 5'ss of exon 5
GTTATGGATATGCTGGGACCTAGCCTCTGGGACGTTTGGAATAATAGCAATCATCAgtaagtccttgaaattatgtcagatatgaataaaattgtattcttt-------gtagttgattttgactttcagttgctgtgctaatgtgtttttctgaattccag
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GTTATGGATATGCTGGGACCCAGTCTTTGGGATGTTTGGAATAATAATTCTCACACgtgagttttccaatttagctaacatttatgtagacttctaatttatcactaacatagtttgttttggttttcag--------------------------------
upper sequence: GLYMA07G01890.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g10150.2 (Oryza sativa), 5'ss of exon 5
GTTATGGATATGCTGGGACCTAGCCTCTGGGACGTTTGGAATAATAGCAATCATCAgtaagt-ccttgaaattatgtcagatatgaataaaattgtattctttgtagttgattttgactttcagttgctgtgctaatgtgtttttctgaattccag
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GTTATGGATATGTTGGGACCGAGCCTGTGGGATGTTTGGAATAACAATTCCCACTCgtgggcatcttttgactcttcctaat-------------taatcttgacagttcaatgcagccttt--tcaattttttaatttgtggccttcttttacag
upper sequence: GLYMA07G01890.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G045259_T01 (Zea mays), 5'ss of exon 5
GTTATGGATATGCTGGGACCTAGCCTCTGGGACGTTTGGAATAATAGCAATCATCAgtaagtccttgaaattatgtcagatatgaataaaattgtattctttgtagttgattttgactttcagttgctgtgctaatgtgtttttctgaattccag
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GTTATGGATATTTTGGGACCAAGCCTATGGGATGTTTGGAATAATAATTCCCACTCgtgggtatctgcacattctttgca-----attacacttcactgtttctatttgatctttccaatca-ttcctgagct--tgtcttttacag--------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192326672|gb|FK018514.1|FK018514EST: GATATGCTGGGACCTAGCCTCTGGGACGTTTGGAATAATAGCAATCATCA CATGACCACTGAAATGGTTGCTTGTATTGCCATTGAAGCAATATCTATATT
genomic: GATATGCTGGGACCTAGCCTCTGGGACGTTTGGAATAATAGCAATCATCAgtaagtcctt ... tgaattccagCATGACCACTGAAATGGTTGCTTGTATTGCCATTGAAGCAATATCTATATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTATGGATATGCTGGGACCTAGCCTCTGGGACGTTTGGAATAATAGCAATCATCAgtaagtccttgaaattatgtcagatatgaataaaattgtattctttgtagttgattttgactttcagttgctgtgctaatgtgtttttctgaattccag
- - - - ATGCTG