Sequence
atgc intronic sequence ATGC exonic sequenceAGACGGCATAAAAAGAAAAGAGAGGCCTACTGATAAAGGTGTTGCATGGCTTGTCAAAACACAATATATATCTCCTCTAAGCATGGAGTCAACAAAGCAGgtattagtcatatatattgatatgatgatgcattactctcactacaaacaaaaacttatgaacattttatttgtag
Basic information
species | Glycine max |
transcript | GLYMA07G01830.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G01830.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G055520_T02 (Zea mays), 5'ss of exon 4
AGACGGCATAAAAAGAAAAGAGAGGCCTACTGATAAAGGTGTTGCATGGCTTGTCAAAACACAATATATATCTCCTCTAAGCATGGAGTCAACAAAGCAGgta--ttagtcatatatattgatatgatgatgcattactctcactacaaacaaaaacttatgaacattttatttgtag
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AGAAGGTACAAGGAAAAGGGAGAGGCCCACTGACAAAGGTGTTTCTTGGTTGGTCAAAACACAATACATATCTCCACTAAGTGCTGATGCAGCCAAAACGgtaagtcggtaacgcatactga----gttttgtgtgaatttagttaca--caataattacttaatgttaatgatacag
upper sequence: GLYMA07G01830.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G055520_T01 (Zea mays), 5'ss of exon 4
AGACGGCATAAAAAGAAAAGAGAGGCCTACTGATAAAGGTGTTGCATGGCTTGTCAAAACACAATATATATCTCCTCTAAGCATGGAGTCAACAAAGCAGgta--ttagtcatatatattga-tatgatgatgcattactctcactacaaaca---aaaacttatga-acattttatttgtag-----------------
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AGAAGGTACAAGGAAAAGGGAGAGGCCCACTGACAAAGGTGTTTCTTGGTTGGTCAAAACACAATACATATCTCCACTAAGTGCTGATGCAGCCAAAACGgtaagtcggtaacgcatactgagttttgtgtgaatttagttacacaataattacttaatgttaatgatacagactgaataaaagttgtctggctttccag
upper sequence: GLYMA07G01830.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0002g03510.t01 (Vitis vinifera), 5'ss of exon 4
AGACGGCATAAAAAGAAAAGAGAGGCCTACTGATAAAGGTGTTGCATGGCTTGTCAAAACACAATATATATCTCCTCTAAGCATGGAGTCAACAAAGCAGgtattagtcatatatattgatatgatgatgca-ttactctcactacaaacaaaaactta--tgaac---atttta-tttgtag
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GGAGGGCATCAAGAAAAAAGAACGGCCTACTGATAAAGGTGTTTCTTGGTTGGTTAAGACACAGTATATTTCTCCTCTTAGCACAGAATCAACAAAGCAGgtatgatctagctac-cagattttacaatttaactagtattattggaagccaagtcatggttgaaatgaattgcaatttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254332104|gb|GR846307.1|GR846307EST: TTGTCAAAACACAATATATATCTCCTCTAAGCATGGAGTCAACAAAGCAG TCTTTAACTGAGAAACAAGCTAAGGAGCTGAGAGAGATGAAAGGAGGTCGT
genomic: TTGTCAAAACACAATATATATCTCCTCTAAGCATGGAGTCAACAAAGCAGgtattagtca ... ttatttgtagTCTTTAACTGAGAAACAAGCTAAGGAGCTGAGAGAGATGAAAGGAGGTCGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGACGGCATAAAAAGAAAAGAGAGGCCTACTGATAAAGGTGTTGCATGGCTTGTCAAAACACAATATATATCTCCTCTAAGCATGGAGTCAACAAAGCAGgtattagtcatatatattgatatgatgatgcattactctcactacaaacaaaaacttatgaacattttatttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA