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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACAATCCAGCATACAACACTAAATATGGGATTTACTCAGAGAGATGTGGACTTAACAATGTGATGATGTCATGGGGACACGATGACTACATGTATCTAgtaagcccttggaaaatcctagtaatatatgtattatttattatttagaatatttaagggtattatttcataaattctgaaagaaatgtctaaagtttgggtgctgtcttag

Basic information

species Glycine max
transcript GLYMA07G01660.5
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01660.5 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0002g02940.t01 (Vitis vinifera), 5'ss of exon 7
CAACAATCCAGCATACAACACTAAATATGGGATTTACTCAGAGAGATGTGGACTTAACAATGTGATGATGTCATGGGGACACGATGACTACATGTATCTAgtaagcccttggaaaatc-ctagtaatatatgtattatttattatttagaatatttaagggtattatttcataaattctgaaaga--aatgtctaaagtttgggtgctg--tcttag
| | ||||| || ||||||||||| |||||| ||||||||||| | ||||| ||| | |||||||||||||| ||||| || |||||||||||||| || |||     ||  ||     ||   | ||| ||   ||  |  ||  ||  || |||      ||| |||   |  ||  ||  ||  ||  |||||  |       ||   | ||||
CTATAATCCTGCTTACAACACTAAGTATGGGGTTTACTCAGAGGGCTGTGGGCTTGAGAATGTGATGATGTCGTGGGGGCATGATGACTACATGTACCTGgtacatgtttcaaactctgctcacattatctgctctaccttctacataacattttt----tcattgttttcaaggttaagagtgacaaaattctaacttcccatctctcatttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192311639|gb|FK003556.1|FK003556
EST:     GACTTAACAATGTGATGATGTCATGGGGACACGATGACTACATGTATCTA                         GTGGCAAAGGAGAATAGTACTACACTGCCCTCTGCGGCTTTGTTCATTATA
genomic: GACTTAACAATGTGATGATGTCATGGGGACACGATGACTACATGTATCTAgtaagccctt ... gctgtcttagGTGGCAAAGGAGAATAGTACTACACTGCCCTCTGCGGCTTTGTTCATTATA
EST: gi|15661860|gb|BI699231.1|BI699231
EST:     CACGATGACTACATGTATCTA                         GTGGCAAAGGAGAATAATACTACACTGCCCTCTGCGGCTTTGTTCATTATA
genomic: CACGATGACTACATGTATCTAgtaagccctt ... gctgtcttagGTGGCAAAGGAGAATAGTACTACACTGCCCTCTGCGGCTTTGTTCATTATA
EST: gi|192315625|gb|FK007453.1|FK007453
EST:     GACTTAACAATGTGATGATGTCATGGGGACACGATGACTACATGTATCTA                         GTGGCAAAGGAGAATAGTACTACACTGCCCTCTGCGGCTTTGTTCATTATA
genomic: GACTTAACAATGTGATGATGTCATGGGGACACGATGACTACATGTATCTAgtaagccctt ... gctgtcttagGTGGCAAAGGAGAATAGTACTACACTGCCCTCTGCGGCTTTGTTCATTATA
EST: gi|31457327|gb|CD399355.1|CD399355
EST:     GACTTAACAATGTGATGATGTCATGGGGACACGATGACTACATGTATCTA                         GTGGCAAAGGAGAATAGTACTACACTGCCCTCTGCGGCTTTGTTCATTATA
genomic: GACTTAACAATGTGATGATGTCATGGGGACACGATGACTACATGTATCTAgtaagccctt ... gctgtcttagGTGGCAAAGGAGAATAGTACTACACTGCCCTCTGCGGCTTTGTTCATTATA
EST: gi|192295840|gb|FG992636.1|FG992636
EST:     GACTTAACAATGTGATGATGTCATGGGGACACGATGACTACATGTATCTA                         GTGGCAAAGGAGAATAGTACTACACTGCCCTCTGCGGCTTTGTTCATTATA
genomic: GACTTAACAATGTGATGATGTCATGGGGACACGATGACTACATGTATCTAgtaagccctt ... gctgtcttagGTGGCAAAGGAGAATAGTACTACACTGCCCTCTGCGGCTTTGTTCATTATA
EST: gi|163921205|gb|EH039507.1|EH039507
EST:     GACTTAACAATGTGATGATGTCATGGGGACACGATGACTACATGTATCTA                         GTGGCAAAGGAGAATAATACTACACTGCCCTCTGCGGCTTTGTTCATTATA
genomic: GACTTAACAATGTGATGATGTCATGGGGACACGATGACTACATGTATCTAgtaagccctt ... gctgtcttagGTGGCAAAGGAGAATAGTACTACACTGCCCTCTGCGGCTTTGTTCATTATA
EST: gi|192315626|gb|FK007454.1|FK007454
EST:     GACTTAACAATGTGATGATGTCATGGGGACACGATGACTACATGTATCTA                         GTGGCAAAGGAGAATAGTACTACACTGCCCTCTGCGGCTTTGTTCATTATA
genomic: GACTTAACAATGTGATGATGTCATGGGGACACGATGACTACATGTATCTAgtaagccctt ... gctgtcttagGTGGCAAAGGAGAATAGTACTACACTGCCCTCTGCGGCTTTGTTCATTATA