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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGACACTGCTTTTGAAAAGCAGAGTGCTCTATTTGCTCTTGCTGTCTCAGATATAGTGCTAATAAACATgtgagtttttccccctttttagttttcacccttgttacatctttaatactgactaatttcagaattttgaagtctgtagctgcttgtatttcttattttaatgttttcccatttgaatcttctttctttatgcaactaatttccctccccctctgcaatgcttgcaaag

Basic information

species Glycine max
transcript GLYMA07G01230.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01230.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G13870.2 (Arabidopsis thaliana), 5'ss of exon 5
GATGACACTGCTTTTGAAAAGCAGAGTGCTCTATTTGCTCTTGCTGTCTCAGATATAGTGCTAATAAACATgtgagtttttccccctttttagttttcacccttgttacatctttaatactgactaatttcagaattttgaagtctgtagctgcttgtatttcttattttaatgttttcccatttgaatcttctttctttatgcaactaatttccctccccctctgcaatgcttgcaaag
||||| |||||||| || || ||||||||||| ||||| ||||| |||||||| ||||| || |||||||||| |||  |   |  |  || ||||||     | ||| ||   ||| |  ||||  |||     | || |  | | || || || | |||| | ||                                                                         
GATGATACTGCTTTCGAGAAACAGAGTGCTCTTTTTGCACTTGCAGTCTCAGACATAGTTCTTATAAACATgtaagtggtgttctttactttgttttctttgatatta-atagataacag-gacttcttttgccgtctttatct-tatatcttctcggatttgtaatgcag---------------------------------------------------------------------

upper sequence: GLYMA07G01230.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0002g02200.t01 (Vitis vinifera), 5'ss of exon 5
GATGACACTGCTTTTGAAAAGCAGAGTGCTCTATTTGCTCTTGCTGTCTCAGATATAGTGCTAATAAACATgtgagtttttccccctttttagttttcacccttgttacatctttaatactgactaatttcagaattttgaagtctgtagctgcttgtatttcttattttaatgttttccc-atttgaatcttctttctttatgcaactaatttccctccccctctgcaatgcttgcaaag
||||| ||||| ||||| ||||||||||| || |||||||||||||| ||||| ||||||||||| ||||||| ||||||    |      ||   |    ||||     |    | ||      | ||  | |  |||  ||   ||| ||  ||  ||   ||||   | |  | ||   |   |||| || |||                                            
GATGATACTGCATTTGAGAAGCAGAGTGCCCTTTTTGCTCTTGCTGTTTCAGACATAGTGCTAATCAACATgtaagttttattacaaaacaaggcatataacttggattctacagattatgtttcagttaaacatgttttgag---gtatctcttta-atggtttatgcgagtaatatcttgaagcgaattttgtttag------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209704689|gb|BW656667.1|BW656667
EST:     CAGAGTGCTCTATTTGCTCTTGCTGTCTCAGATATAGTGCTAATAAACAT                         GTGGTGCCATGACATTGGCCGTGAGCAAGCTGCAAATAAGCCACTTTTGAA
genomic: CAGAGTGCTCTATTTGCTCTTGCTGTCTCAGATATAGTGCTAATAAACATgtgagttttt ... gcttgcaaagGTGGTGCCATGACATTGGCCGTGAGCAAGCTGCAAATAAGCCACTTTTGAA
EST: gi|213597827|gb|DB962180.1|DB962180
EST:     CAGAGTGCTCTATTTGCTCTTGCTGTCTCAGATATAGTGCTAATAAACAT                         GTGGTGCCATGACATTGGCCGTGAGCAAGCTGCAAATAAGCCACTTTTGNA
genomic: CAGAGTGCTCTATTTGCTCTTGCTGTCTCAGATATAGTGCTAATAAACATgtgagttttt ... gcttgcaaagGTGGTGCCATGACATTGGCCGTGAGCAAGCTGCAAATAAGCCACTTTTGAA