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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGCCAGACTAGTAGGCCTTCAAGTATATCCATTAGTAATACAACAGCATTTCAACATAAACTTACAAGCAGTGCCCATCGCTTCAATTTGATGGTCCAGgtgagaatttccgtcttgacttgatattggcttgttacactgaagtactgaacaatgtttggaatggtttcagaacagagatgttgcattggttgggaca...

Basic information

species Glycine max
transcript GLYMA07G00570.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G00570.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0018g01920.t01 (Vitis vinifera), 5'ss of exon 3
TCGCCAGACTAGTAGGCCTTCAAGTATATCCATTAGTAATACAACAGCATTTCAACATAAACTTACAAGCAGTGCCCATCGCTTCAATTTGATGGTCCAGgtgagaatttccgtcttgacttgatattggcttgttacactgaagtactgaac--aatgtttggaatggtttca-gaacagagatgttgcattggttgggaca--
 |||||  || | |||||||| ||||| ||  || |||| ||||||||||| || ||||||||| |||| ||||| ||||| || |||||||||||||||||||  |  |  || ||  ||| | |||  | | | | | |||  |  || |   | |  |  |  || || || |  |    || |    || |||  |  |  
ACGCCAATCTGGCAGGCCTTCTAGTATGTCTCTTGGTAACACAACAGCATTCCACCATAAACTTTCAAGTAGTGCTCATCGGTTTAATTTGATGGTCCAGgtgaatagctt-gtttttgctt-acatt--cgtatca-attgatatcttggatctatttgtctgtgtgcttgcacgtgccagcatttcctttttgttaagcaacc