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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACTCGGTGTATTTGATTGGTGCGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCTTTTCTTCCTATGCATCCAGgtagatttaattaattttattttgtcactctgtttggaatgatatatatttaaattggtgaatatacaatatttaatcattaaatctcacttccaccttaactattgtag

Basic information

species Glycine max
transcript GLYMA07G00330.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G00330.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0054g01230.t01 (Vitis vinifera), 5'ss of exon 5
ATACTCGGTGTATTTGATTGGTGCGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCTTTTCTTCCTATGCATCCAGgtagatttaattaattttattttgtcactctgtttggaatgatatatatttaaattggtgaatatacaatatttaatcattaaatctcacttccaccttaactattgtag
||  | ||  | ||||| ||||  ||||||||||||||||||||||||||||   || | || |||  |||||||||| ||||||||   ||    |      || |  |||     ||     | | || || ||       | |||  |   ||  |  | |    ||||  | |  | |||    ||     
ATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTCACTCTTCCCCTCTCATCTTCCTATGAATCCAGgt---ttgtggtgtagcaatctactcaagtgcttgaatttaacatctacttctgc-acttaatgcattttacatcctaaggccatcttgcataaaacttgga-at-----

upper sequence: GLYMA07G00330.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0054g01290.t01 (Vitis vinifera), 5'ss of exon 5
ATACTCGGTGTATTTGATTGGTGCGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCTTTTCTTCCTATGCATCCAGgtagatttaattaattttattttgtcactctgtttg--gaatgatatatatttaaattggtgaatatacaatatttaatcattaaatctcacttccaccttaactattgtag
 || | ||  ||||||| | ||  |||||||||||||||||||||||||||||| || | || ||||||||||||||||||||||||  | ||  | ||||| |  |   |  |    ||   | ||  || ||||| | ||        ||  ||| |  |||   | |   | |||   | |  |  |       
CTATTTGGCTTATTTGACTAGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTTTTCTTCCTATGCATCCAGGTTAAgttcttgaatttaacatctactttacacttaatgtattttacatattaagatcttcttgcatggaatttggaatttgtcacattgactcaaaacagagtt-------

upper sequence: GLYMA07G00330.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0054g01360.t01 (Vitis vinifera), 5'ss of exon 2
ATACTCGGTGTATTTGATTGGTGCGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCTTTTCTTCCTATGCATCCAGgtagatttaattaattttattttgtcactctgtttggaatgatatatatttaaattggtgaatatacaatatttaatcattaaatctcacttccaccttaactattgtag
||  | ||  | ||||| ||||  |||||||||||||||||||||||||||||| || | || |||  |||||||||||||||||||   ||    |    | || |  |||   || ||| |    |  | || ||  |  |    ||    || ||  ||| |    |||  ||| ||    |  |    |  
ATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCTATGCATCCAGgt---ttgtgctgtagtcatctactcaag-tgcttgaat---ttcacatctacttctgcacttaatgcattttacatcctagggtctt-cttacataaaacttggaat--

upper sequence: GLYMA07G00330.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0054g01390.t01 (Vitis vinifera), 5'ss of exon 5
ATACTCGGTGTATTTGATTGGTGCGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCTTTTCTTCCTATGCATCCAGgtagatttaattaattttattttgtcactctgtttggaatgatatatatttaaattggtgaatatacaatatttaatcattaaatctcacttccaccttaactattgtag
||  | ||  | ||||| ||||  |||||||||||||||||||||||||||||| |  | || |||  |||||||||||||||||||   ||    |    | || |  |||   || ||| |    |  | || ||  |  |    ||    || ||  ||| |    |||  ||| ||    |  |    |  
ATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTTTTCCCTTCTCGTCTTCCTATGCATCCAGgt---ttgtgctgtagtcatctactcaag-tgcttgaat---ttcacatctacttctgcacttaatgcattttacatcctagggtctt-cttacataaaacttggaat--

upper sequence: GLYMA07G00330.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0054g01220.t01 (Vitis vinifera), 5'ss of exon 5
ATACTCGGTGTATTTGATTGGTGCGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCTTTTCTTCCTATGCATCCAGgtagatttaattaattttattttgtcactctgtttggaatgatatatatttaaattggtgaatatacaatatttaatcattaaatctcacttccaccttaactattgtag
||  | ||  | ||||| ||||  |||||||||||||||||||||||||||||| || | || |||  |||||| ||||||||||||   ||    |    | || |  |||   || ||| |    |  | || ||  |  |    ||    || ||| || | |||      ||| ||    |  |    |  
ATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCCATGCATCCAGgt---ttgtgctgtagtcatctactcaag-tgcttgaat---ttcagatctacttctgcacgtaatgtatttttcat-actaaggtcttcttgcataaaacttggaat--

upper sequence: GLYMA07G00330.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0054g01410.t01 (Vitis vinifera), 5'ss of exon 5
ATACTCGGTGTATTTGATTGGTGCGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCTTTTCTTCCTATGCATCCAGgtagatttaattaattttattttgtcactctgtttggaatgatatatatttaaattggtgaatatacaatatttaatcattaaatctcacttccaccttaactattgtag
 || | ||  ||||||| ||||  |||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||   ||    ||  |  |     |||   | ||     | | || || ||       | ||| ||     ||||   |||||      ||| ||    |  |    |  
CTATTTGGCTTATTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCCTCCCTTCTTTTCTTCCTATGCATCCAGgt---ttatgctatgtccaccaactcaagttcttgaatttaacatctactttg--cacttaatgtat----tttacatattaagatcttcttgcatggaatttggaatt-

upper sequence: GLYMA07G00330.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0054g01140.t01 (Vitis vinifera), 5'ss of exon 1
ATACTCGGTGTATTTGATTGGTGCGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCTTTTCTTCCTATGCATCCAGgtagatttaatta---attttattttgtcactctgtttggaatgatatatatttaaattggtgaatatacaatatttaatcattaaatctcacttccaccttaactattgtag
                            ||||  |||||||||||| ||||||||||||||| | ||||||||| || |||| |||||   |||||||   |||   |||| |     || ||| | |   || ||    |   | |   |   ||| ||   || ||   ||   | || ||  ||  |||      
---------------------------TGCAATTCAATGCCCCCAGTGTTTTGGATCCTTCCTTATTTTCTTCCCATACATCTAGgtattattaattacacattaatttttattcaaatgcttgaatttgcatttaggcta--cgtttggttggcaaaat---atgataggatagaatttgcatatt--cta------

upper sequence: GLYMA07G00330.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0054g01520.t01 (Vitis vinifera), 5'ss of exon 8
ATACTCGGTGTATTTGATTGGTGCGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCTTTTCTTCCTATGCATCCAGgt---------ag--atttaattaa---ttttattttgtcactctgtttggaa--tgatatatatttaaattggtgaatatacaatatttaatcattaaatc--tcacttccaccttaactattgtag--------------------------------------
||  | ||  | ||||| ||||  |||||||||||||||||||||||||||||| || | || |||  ||||||||| |||||||||         ||  || || | ||    || | |||  ||    |||  | |  ||||  || |||| ||    |  | | |     | || | |  |||   ||||    ||   || | ||  ||                                      
ATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCTAT-CATCCAGgtttgtggtgtagtcatctactcaagtgcttgaatttcacatctagttctgcacttgatgcat-tttacatcctagggtcttcttacataaaacttggaattggtcacacggactcgaaatgtttaagccaaaagctgtgtaacttcagccttatacaattataag