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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCACTCTTCAAGCTATTGCAGTTACTTTTGTTATGGAACACAAGCCATCCGTGTGGACAATTGGCTGGGATATGAACTTACTTGCCGCTGCCTATGCTgtaagaatacgatcattattttttttcttccatttaattaattattaattatggggctctttctaatagtatgttagtaaaatgattattttaatatttgtgtattaattgtattag

Basic information

species Glycine max
transcript GLYMA06G46740.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G46740.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv13s0084g00090.t01 (Vitis vinifera), 5'ss of exon 5
AGGCACTCTTCAAGCTATTGCAGTTACTTTTGTTATGGAACACAAGCCATCCGTGTGGACAATTGGCTGGGATATGAACTTACTTGCCGCTGCCTATGCTgtaagaatacgatcattattttttttcttccatttaattaattattaattatggggctctttctaatagtatgttagtaaaatgattattttaatatttgtgtattaattgtattag
 |||||||| ||||| ||||| || || |||||||||||||| ||  | || || ||||||||||||||||| |||||  | ||||| ||||||||||| |||            |   | | | |||  |  |   |   |   |   | |    |||| |||     | | | | || | || |||||||   || |||                
TGGCACTCTACAAGCCATTGCTGTCACCTTTGTTATGGAACATAAAACCTCTGTTTGGACAATTGGCTGGGACATGAATCTCCTTGCAGCTGCCTATGCGgtat--------ctctctctctctctctctctctctctctctctctctctctctctctctctctcgctctctctgaatata-tgtttatttttccatgtgtag--------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207792952|gb|GD766594.1|GD766594
EST:     GGCTGGGATATGAACTTACTTGCCGCTGCCTATGCT                         GGGATTGTTACATCAAGCATAACATACTATGTCCAAGGATTGGTAATTAAG
genomic: GGCTGGGATATGAACTTACTTGCCGCTGCCTATGCTgtaagaatac ... attgtattagGGGATTGTTACATCAAGCATAACATACTATGTCCAAGGATTGGTAATTAAG
EST: gi|15200423|gb|BI424342.1|BI424342
EST:     CCGTGTGGACAATTGGCTGGGATATGAACTTACTTGCCGCTGCCTATGCT                         GGGATTGTTACATCAAGCATAACATACTATGTCCAAGGATTGGTAATTAAG
genomic: CCGTGTGGACAATTGGCTGGGATATGAACTTACTTGCCGCTGCCTATGCTgtaagaatac ... attgtattagGGGATTGTTACATCAAGCATAACATACTATGTCCAAGGATTGGTAATTAAG
EST: gi|209723500|gb|BW669503.1|BW669503
EST:     CCGTGTGGACAATTGGCTGGGATATGAACTTACTTGCCGCTGCCTATGCT                         GGGATTGTTACATCAAGCATAACATACTATGTCCAAGGATTGGTAATTAAG
genomic: CCGTGTGGACAATTGGCTGGGATATGAACTTACTTGCCGCTGCCTATGCTgtaagaatac ... attgtattagGGGATTGTTACATCAAGCATAACATACTATGTCCAAGGATTGGTAATTAAG