1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GAACTAAAACGAAGGGAAGATGCTATAGCACGAGgtatttgagttcatctattctttatagaaatcaactagagtgatgtctgtattttggtttcttaactctttatttttttttttcatttgcag
species | Glycine max |
transcript | GLYMA06G45160.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAACTAAAACGAAGGGAAGATGCTATAGCACGAG CTGGAATAGTTATAGAGGAGAAAAATTGGCCTACCTTTTTTCCCCATCATTEST: gi|193726147|gb|FK656437.1|FK656437
genomic: GAACTAAAACGAAGGGAAGATGCTATAGCACGAGgtatttgagt ... tcatttgcagCTGGAATAGTTATAGAGGAGAAAAATTGGCC-ACCTTTTTTCCCCATCATT
EST: GAACTAAAACGAAGGGAAGATGCTATAGCACGAG CTGGAATAGTTATAGAGGAGAAAAATTGGCCACCTTTTTTCCCCATCATTCEST: gi|13181293|gb|BG352633.1|BG352633
genomic: GAACTAAAACGAAGGGAAGATGCTATAGCACGAGgtatttgagt ... tcatttgcagCTGGAATAGTTATAGAGGAGAAAAATTGGCCACCTTTTTTCCCCATCATTC
EST: TAAAACGAAGGGAAGATGCTATAGCACGAG CTGGAATAGTTATAGAGGAGAAAAATTGGCCACCTTTTTTCCCCATCATTCEST: gi|298178903|gb|HO024638.1|HO024638
genomic: TAAAACGAAGGGAAGATGCTATAGCACGAGgtatttgagt ... tcatttgcagCTGGAATAGTTATAGAGGAGAAAAATTGGCCACCTTTTTTCCCCATCATTC
EST: GAACTAAAACGAAGGGAAGATGCTATAGCACGAG CTGGAATAGTTATAGAGGAGAAAAATTGGCCACCTTTTTTCCCCATCATTCEST: gi|193536034|gb|FK491332.1|FK491332
genomic: GAACTAAAACGAAGGGAAGATGCTATAGCACGAGgtatttgagt ... tcatttgcagCTGGAATAGTTATAGAGGAGAAAAATTGGCCACCTTTTTTCCCCATCATTC
EST: GAACTAAAACGAAGGGAAGATGCTATAGCACGAG CTGGAATAGTTATAGAGGAGAAAAATTGGCCACCTTTTTTCCCCATCATTCEST: gi|193668046|gb|FK610618.1|FK610618
genomic: GAACTAAAACGAAGGGAAGATGCTATAGCACGAGgtatttgagt ... tcatttgcagCTGGAATAGTTATAGAGGAGAAAAATTGGCCACCTTTTTTCCCCATCATTC
EST: GAACTAAAACGAAGGGAAGATGCTATAGCACGAG CTGGAATAGTTATAGAGGAGAAAAATTGGCCACCTTTTTTCCCCATCATTCEST: gi|21887940|gb|BQ741153.1|BQ741153
genomic: GAACTAAAACGAAGGGAAGATGCTATAGCACGAGgtatttgagt ... tcatttgcagCTGGAATAGTTATAGAGGAGAAAAATTGGCCACCTTTTTTCCCCATCATTC
EST: GAACTAAAACGAAGGGAAGATGCTATAGCACGAG CTGGAATAGTTATAGAGGAGAAAAATTGGCCACCTTTTTTCCCCATCATTC
genomic: GAACTAAAACGAAGGGAAGATGCTATAGCACGAGgtatttgagt ... tcatttgcagCTGGAATAGTTATAGAGGAGAAAAATTGGCCACCTTTTTTCCCCATCATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACTAAAACGAAGGGAAGATGCTATAGCACGAGgtatttgagttcatctattctttatagaaatcaactagagtgatgtctgtattttggtttcttaactctttatttttttttttcatttgcag
- - - - - - - GGAAGA
- - - - - - - - AAGATG