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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGCCTCAAGTACAGATTATTGGGTTCCGAGGGTGACATTGGTTCCTGGGGCCACGAGTATGTTAGgtgagaataatctgtttttggggcaccttttgttgttttttaattgttatagaaggtaattactaggaaaattagaattttggtgaagtctgattgaggagttattcatcaatcttaatcttattagttatgttttcatttttttgtcag

Basic information

species Glycine max
transcript GLYMA06G44340.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G44340.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv12s0028g03130.t01 (Vitis vinifera), 5'ss of exon 5
GAAAGCCTCAAGTACAGATTATTGGGTTCCGAGGGTGACATTGGTTCCTGGGGCCACGAGTATGTTAGgtgagaataatctgtttttggggcaccttttgtt-gttttttaattgttatagaaggtaattactaggaaaattagaattttggtgaagtctgattgaggagttattcatcaatcttaatcttattagttatgttttcatttttttgtcag
|| || || ||||||||||| || || || || ||||| ||||||||||||||||| |||||||| |||| || || ||  | |    |         |||| ||||| | ||| || | |   | ||| |  |   |    |  |   ||   |||   ||   |                                                     
GAGAGTCTAAAGTACAGATTGTTAGGATCAGAAGGTGATATTGGTTCCTGGGGCCATGAGTATGTCAGgtaagcatcattggctgaaagcattgtcagtgttcgttttcttatttttttggtgaggaatcaaaatttatcacaagaggatgaaaaagggggaaaaacc---------------------------------------------------

upper sequence: GLYMA06G44340.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S414_22V6.1 (Physcomitrella patens), 5'ss of exon 5
GAAAGCCTCAAGTACAGATTATTGGGTTCCGAGGGTGACATTGGTTCCTGGGGCCACGAGTATGTTAGgtgagaataa-tctgtttttggggcaccttttgttgttttttaattgttatagaaggtaattactaggaaaattag--aattttggtgaagtctgattgaggagttattcatcaatctta---atcttattagtt---------atgttttcatttttttgtcag---------------------
|||||| |    ||||||||   |||| | |  || ||||||||||| ||||||||||||||||| ||||  |   || || | |  |    |     |  || ||    |  | |  |  | |  || ||||  |   |||    || ||| |    | |||  | |||  ||| || | | | |||   | |||  |  ||         |    |||||||||  || |                      
GAAAGCTTGCGCTACAGATTGCAGGGTACGGTTGGAGACATTGGTTCTTGGGGCCACGAGTATGTCAGgtatgttcaaatcagctcgtcacaccgaactcattattggc-atatatagtgaatgtcaactactgtgccgattcatcaactttaggttcggctgtgt-agggtttagtccttatttttataaaactttctgttttggaaagagactagttcatttttgggtgattcacacttttctgttctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208028183|gb|GD826273.1|GD826273
EST:     GGCCACGAGTATGTTAG                         GAATCTAGCTGGAGAAATTGCTCAGGAATACACAAAACGACAG
genomic: GGCCACGAGTATGTTAGgtgagaataa ... tttttgtcagGAATCTAGCTGGAGAAATTGCTCAGGAATACACAAAACGACAG
EST: gi|213617174|gb|DB971293.1|DB971293
EST:     TTATTGGGTTCCGAGGGTGACATTGGTTCCTGCGGCCACGAGTATGTTAG                         GAATCTAGCTGGAGAAATTGCTCAGGAATACACAAAACGACAG
genomic: TTATTGGGTTCCGAGGGTGACATTGGTTCCTGGGGCCACGAGTATGTTAGgtgagaataa ... tttttgtcagGAATCTAGCTGGAGAAATTGCTCAGGAATACACAAAACGACAG