1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGAGAAAATAATGACAACTCCAAGGAAAGAGAAAAAGAGAGAGGCTCGAAGAGAAGAGAAGGCCGAAAAAGCAGCTTTGTTAGAAAAGgtcatagttaatcttaatgttacccatgcccattaaattgtatgttgttttcacattactcactggtgcttttgaatattatttag
species | Glycine max |
transcript | GLYMA06G43930.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAGCTTTGTTAGAAAAG TCTATTGAAAAAGAGCTATTAGAACGCCTTCAAAAAGGAGTTTATCAACAAEST: gi|193484164|gb|FK449820.1|FK449820
genomic: CAGCTTTGTTAGAAAAGgtcatagtta ... tattatttagTCTATTGAAAAAGAGCTATTAGAACGCCTTCAAAAAGGAGTTTATCAACAA
EST: TGTTAGAAAAG TCTATTGAAAAAGAGCTATTGGAACGCCTTCAAAAAGGAGTTTATCAACAAEST: gi|208306599|gb|GE104468.1|GE104468
genomic: TGTTAGAAAAGgtcatagtta ... tattatttagTCTATTGAAAAAGAGCTATTAGAACGCCTTCAAAAAGGAGTTTATCAACAA
EST: AGAAGAGAAGGCTGAAAAAGCAGCTTTGTTAGAAAAG TCTATTGAAAAAGAGCTATTGGAACGCCTTCAAAAAGGAGTTTATCAACAA
genomic: AGAAGAGAAGGCCGAAAAAGCAGCTTTGTTAGAAAAGgtcatagtta ... tattatttagTCTATTGAAAAAGAGCTATTAGAACGCCTTCAAAAAGGAGTTTATCAACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGAAAATAATGACAACTCCAAGGAAAGAGAAAAAGAGAGAGGCTCGAAGAGAAGAGAAGGCCGAAAAAGCAGCTTTGTTAGAAAAGgtcatagttaatcttaatgttacccatgcccattaaattgtatgttgttttcacattactcactggtgcttttgaatattatttag
- - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT