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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTTCAGGGGATTAGCATATATCCATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTGgtacgttttctttcaatgtttttcctgagttgtattcatttattctaaaccttttgcatatatgactacag

Basic information

species Glycine max
transcript GLYMA06G42840.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G42840.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G472625_T02 (Zea mays), 5'ss of exon 5
ATCTTCAGGGGATTAGCATATATCCATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTGgtacgttttctttcaa--------tgtttttcctgagttgtattcatttattctaaac----cttttgcatatatgac-tacag
 | ||||| ||  |||| ||||| ||||  |  |   |||| |||||||||||||||||||| |||||  ||||||||||| |  | |  |         ||| || ||  | | |  | | |  |||| |      ||  | | | | |||  |||||
CTTTTCAGAGGCCTAGCCTATATTCATAATGTACCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTGgtacgtgtcatgtggacaaggtttcgttctttctttgatttggtaactagttctgagttggtctgatccttctttgatatacag

upper sequence: GLYMA06G42840.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv12s0028g01810.t01 (Vitis vinifera), 5'ss of exon 5
ATCTTCAGGGGATTAGCATATATCCATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTGgta-------cgttttctttcaatgtttttcctgagttgtattcatttattctaaaccttttgcat-atatgactacag------------------------
|| || |||||  | || ||||| ||||| |  |   | ||||||||||||||||| |||||||||||| || |||||       | |||| |   || | || |     | || || |  |     |   || ||| | | | ||||||                            
ATTTTTAGGGGGCTGGCCTATATTCATACAGTGCCTGGGGTTTGCCATAGGGATGTGAAGCCTCAAAATGTTCTGgtatattgttcattttttgataaagattatggcatgctgaatcccctccccttcccccctttcctttaaatgacttggactgtttctttgaacataattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193500521|gb|FK464052.1|FK464052
EST:     ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTG                         GTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
genomic: ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTGgtacgttttc ... atgactacagGTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
EST: gi|193656739|gb|FK603771.1|FK603771
EST:     ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTG                         GTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
genomic: ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTGgtacgttttc ... atgactacagGTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
EST: gi|193328173|gb|FK293410.1|FK293410
EST:     CCTCAAAATCTTTTG                         GTTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCGA
genomic: CCTCAAAATCTTTTGgtacgttttc ... atgactacagG-TTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAA
EST: gi|17023095|gb|BM094129.1|BM094129
EST:     ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTG                         GTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
genomic: ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTGgtacgttttc ... atgactacagGTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
EST: gi|11689096|gb|BF596772.1|BF596772
EST:     ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTG                         GTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
genomic: ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTGgtacgttttc ... atgactacagGTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
EST: gi|193403386|gb|FK367708.1|FK367708
EST:     CCTCAAAATCTTTTG                         GTTCATCCTTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCGA
genomic: CCTCAAAATCTTTTGgtacgttttc ... atgactacagGTTCATCC-TCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAA
EST: gi|120531619|gb|EH259752.1|EH259752
EST:     ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTG                         GTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
genomic: ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTGgtacgttttc ... atgactacagGTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
EST: gi|6502169|gb|AW203542.1|AW203542
EST:     ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTG                         GTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
genomic: ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTGgtacgttttc ... atgactacagGTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
EST: gi|9819612|gb|BE555125.1|BE555125
EST:     ATGTAAAGCCTCAAAATCTTTTG                         GTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
genomic: ATGTAAAGCCTCAAAATCTTTTGgtacgttttc ... atgactacagGTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
EST: gi|207763538|gb|GD736653.1|GD736653
EST:     ATACCGCCCTGCGAGTTTGTCATAGGGATGTAAAGCCTCAAAATCTTTTG                         GTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
genomic: ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTGgtacgttttc ... atgactacagGTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
EST: gi|193585798|gb|FK542122.1|FK542122
EST:     ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTG                         GTTCATCCTCTT
genomic: ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTGgtacgttttc ... atgactacagGTTCATCCTCTT
EST: gi|42723166|gb|CK769065.1|CK769065
EST:     ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTG                         GTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
genomic: ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTGgtacgttttc ... atgactacagGTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA