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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGGCTTGGCCTTCATGATATCTGCTTTCATTCGGAAATCATCTTCGGCAACAACAGTGGGGTTCTCTATATTTATTGTCGGCTTTGTGACTCAGgtatgaatcctttttttgctttgtagacatggtttatttagaagcagaaagaaggagtgctcatgttctttttgtctgttgtttttctgtttgcag

Basic information

species Glycine max
transcript GLYMA06G20360.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193637439|gb|FK584462.1|FK584462
EST:     CGGCAACAACAGTGGGGTTCTCTATATTTATTGTCGGCTTTGTGACTCAG                         CTTGTGGTACAACAAGGATTTCCTTACACAGATAGCTTCTCCAAA-CTATA
genomic: CGGCAACAACAGTGGGGTTCTCTATATTTATTGTCGGCTTTGTGACTCAGgtatgaatcc ... ctgtttgcagCTTGTGGTACAACAAGGATTTCCTTACACAGATAGCTTCTCCAAAACTATA
EST: gi|208313430|gb|GE116434.1|GE116434
EST:     AACAACAGTGGGGTTCTCTATATTTATTGTCGGCTTTGTGACTCAG                         CTTGTGGTACAACAAGGATTTCCTTACACAGATAGCTTCTCCAAAACTATA
genomic: AACAACAGTGGGGTTCTCTATATTTATTGTCGGCTTTGTGACTCAGgtatgaatcc ... ctgtttgcagCTTGTGGTACAACAAGGATTTCCTTACACAGATAGCTTCTCCAAAACTATA
EST: gi|208215509|gb|GE013728.1|GE013728
EST:     CGGCAACAACAGTGGGGTTCTCTATATTTATTGTCGGCTTTGTGACTCAG                         CTTGTGGTACAACAAGGATTTCCTTACACAGATAGCTTCTCCAAAACTATA
genomic: CGGCAACAACAGTGGGGTTCTCTATATTTATTGTCGGCTTTGTGACTCAGgtatgaatcc ... ctgtttgcagCTTGTGGTACAACAAGGATTTCCTTACACAGATAGCTTCTCCAAAACTATA
EST: gi|208307383|gb|GE108839.1|GE108839
EST:     CAACAGT-GGGTTCTCTATATTTATTGTCGGCTTTGTGACTCAG                         CTTGTGGTACAACAAGGATTTCCTTACACAGATAGCTTCTCCAAAACTATA
genomic: CAACAGTGGGGTTCTCTATATTTATTGTCGGCTTTGTGACTCAGgtatgaatcc ... ctgtttgcagCTTGTGGTACAACAAGGATTTCCTTACACAGATAGCTTCTCCAAAACTATA