1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGCTGGATTTTGGAGTGCAATGGCATCTAATGTGACAAATCAATCTCGTAATGTTCTTAGCAAAAAGGCCATGGTTAAGAAAGAGgtaatattatctgtgagcacttccaaatgttttggatatatttcattgttgatattgatctttgcatttcaaaagtcattggcgaatctcttaagttataacaagaaataaagagttttttttttttcttttcag
species | Glycine max |
transcript | GLYMA06G19250.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAAATCAATCTCGTAATGTTCTTAGCAAAAAGGCCATGGTTAAGAAAGAG GATTCTATGGACAACATTACTCTCTTCTCTATAATAACTGTAATGTCCTTCEST: gi|10253112|gb|BE820878.1|BE820878
genomic: CAAATCAATCTCGTAATGTTCTTAGCAAAAAGGCCATGGTTAAGAAAGAGgtaatattat ... ttcttttcagGATTCTATGGACAACATTACTCTCTTCTCTATAATAACTGTAATGTCCTTC
EST: CAAATCAATCTCGTAATGTTCTTAGCAAAAAGNNCATGGNTAAGAAAGAG GATTCTATGGACAACATTACTCTCTTCTCTATAATAACTGTAATGTCNNTCEST: gi|11687638|gb|BF595314.1|BF595314
genomic: CAAATCAATCTCGTAATGTTCTTAGCAAAAAGGCCATGGTTAAGAAAGAGgtaatattat ... ttcttttcagGATTCTATGGACAACATTACTCTCTTCTCTATAATAACTGTAATGTCCTTC
EST: AGCAAAAAGGCCATGGTTAAGAAAGAG GATTCTATGGACAACATTACTCTCTTCTCTATAATAACTGTAATGTCCTTCEST: gi|22522844|gb|BU081655.1|BU081655
genomic: AGCAAAAAGGCCATGGTTAAGAAAGAGgtaatattat ... ttcttttcagGATTCTATGGACAACATTACTCTCTTCTCTATAATAACTGTAATGTCCTTC
EST: CAAATCAATCTCGTAATGTTCTTAGCAAAAAGGCCATGGTTAAGAAAGAG GATTCTATGGACAACATTACTCTCTTCTCTATAATAACTGTAATGTCCTTCEST: gi|51337755|gb|CO981621.1|CO981621
genomic: CAAATCAATCTCGTAATGTTCTTAGCAAAAAGGCCATGGTTAAGAAAGAGgtaatattat ... ttcttttcagGATTCTATGGACAACATTACTCTCTTCTCTATAATAACTGTAATGTCCTTC
EST: CAAATCAATCTCGTAATGTTCTTAGCAAAAAGGCCATGGTTAAGAAAGAG GATTCTATGGACAACATTACTCTCTTCTCTATAATAACTGTAATGTCCTTCEST: gi|254322816|gb|GR839837.1|GR839837
genomic: CAAATCAATCTCGTAATGTTCTTAGCAAAAAGGCCATGGTTAAGAAAGAGgtaatattat ... ttcttttcagGATTCTATGGACAACATTACTCTCTTCTCTATAATAACTGTAATGTCCTTC
EST: AGCAAAAA-GCCATGGTTAAGAAAGAG GATTCTATGGACAACATTACTCTCTTCTCTATAATAACTGTAATGTCCTTCEST: gi|6725472|gb|AW309871.1|AW309871
genomic: AGCAAAAAGGCCATGGTTAAGAAAGAGgtaatattat ... ttcttttcagGATTCTATGGACAACATTACTCTCTTCTCTATAATAACTGTAATGTCCTTC
EST: CAAATCAATCTCGTAATGTTCTTAGCAAAAAGGCCATGGTTAAGAAAGAG GATTCTATGGACAACATTACTCTCTTCTCTATAATAACTGTAATGTCCTTCEST: gi|15204323|gb|BI427091.1|BI427091
genomic: CAAATCAATCTCGTAATGTTCTTAGCAAAAAGGCCATGGTTAAGAAAGAGgtaatattat ... ttcttttcagGATTCTATGGACAACATTACTCTCTTCTCTATAATAACTGTAATGTCCTTC
EST: CAAATCAATCTCGTAATGTTCTTAGCAAAAAGGCCATGGTTAAGAAAGAG GATTCTATGGACAACATTACTCTCTTCTCTATAATAACTGTAATGTCCTTCEST: gi|17518865|gb|BM187907.1|BM187907
genomic: CAAATCAATCTCGTAATGTTCTTAGCAAAAAGGCCATGGTTAAGAAAGAGgtaatattat ... ttcttttcagGATTCTATGGACAACATTACTCTCTTCTCTATAATAACTGTAATGTCCTTC
EST: CAAATCAATCTCGTAATGTTCTTAGCAAAAAGGCCATGGTTAAGAAAGAG GATTCTATGGACAACATTACTCTCTTCTCTATAATAACTGTAATGTCCTTC
genomic: CAAATCAATCTCGTAATGTTCTTAGCAAAAAGGCCATGGTTAAGAAAGAGgtaatattat ... ttcttttcagGATTCTATGGACAACATTACTCTCTTCTCTATAATAACTGTAATGTCCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTGGATTTTGGAGTGCAATGGCATCTAATGTGACAAATCAATCTCGTAATGTTCTTAGCAAAAAGGCCATGGTTAAGAAAGAGgtaatattatctgtgagcacttccaaatgttttggatatatttcattgttgatattgatctttgcatttcaaaagtcattggcgaatctcttaagttataacaagaaataaagagttttttttttttcttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA