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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACCAAGCTTATACGATTTTCTTCGGAAAAACAGTTATCGTTCATTTCCCATTGATCTTGTCCGTGAGATTGGCTGGCAACTATTGGAATGTGTAGCATgtgtgtagtatttacttgaacaagtttctttttgatttatttcatctatttccattcctattttgtgcatatcattatgtacaatactgtttttaacaga...

Basic information

species Glycine max
transcript GLYMA06G18530.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G18530.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os12g27520.1 (Oryza sativa), 5'ss of exon 6
GGACCAAGCTTATACGATTTTCTTCGGAAAAACAGTTATCGTTCATTTCCCATTGATCTTGTCCGTGAGATTGGCTGGCAACTATTGGAATGTGTAGCATgtgtgta-gtatttacttgaacaagtttctttttgat-ttatttcatctatttccattcctattttgtgcatatcattatgtacaatactgtttttaacaga-------------------------------------------------------------------------------------------
|||||||||||||| |||||||| |||||||||||||| || ||||| || ||||  || || || ||| ||| |   ||||| ||||||||| ||||||||||||    | || |||     | | |  ||   |   || ||     || |  |||  | ||   |  ||  |||  ||| ||  |  |||  || | ||                                                                                           
GGACCAAGCTTATATGATTTTCTGCGGAAAAACAGTTACCGCTCATTCCCAATTGCCCTAGTTCGGGAGGTTGCCAAACAACTGTTGGAATGTATAGCATgtgtgtgcacagttccttctgttactcttattaccacactaattagcagatctagattattcttccataaattgcatgctgt-catca--gttgatagctgatgctttctttgcttcatccttttaggaatacctaatacctaacctgctttgtttgtttatatatttatcttctctgtaatgtgtgttgcag

upper sequence: GLYMA06G18530.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G179308_T01 (Zea mays), 5'ss of exon 6
GGACCAAGCTTATACGATTTTCTTCGGAAAAACAGTTATCGTTCATTTCCCATTGATCTTGTCCGTGAGATTGGCTGGCAACTATTGGAATGTGTAGCATgtgtgta-gtatttacttgaacaagtttctttttgatttatttcatctatttccattcctattttgtgcatat-cattatgtacaatactgtttttaacaga------------------------------------------------------------------------------
|||||||||||||| |||||||| ||| |||||||||| || ||||| || ||||  || || || ||||||| |   ||||| ||||||||| ||||||||||||    | ||  |   |  |       |    | || | ||| ||  |   ||  | |||     ||||        |   |  || |  ||||   |                                                                              
GGACCAAGCTTATATGATTTTCTGCGGGAAAACAGTTACCGCTCATTCCCAATTGCCCTAGTTCGGGAGATTGCCAAACAACTGTTGGAATGTATAGCATgtgtgtgcacagttcttcctattatcgctcctgcactataatgcatatacattagtttttttttgcaatatatgtgcagcattgtagcctatcattaatccatattactactcatgcttaaggaatatctaacatcatgggatgtttatgtatttaccctctctctgtaatgtgttgcag

upper sequence: GLYMA06G18530.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G24740.1 (Arabidopsis thaliana), 5'ss of exon 6
GGACCAAGCTTATACGATTTTCTTCGGAAAAACAGTTATCGTTCATTTCCCATTGATCTTGTCCGTGAGATTGGCTGGCAACTATTGGAATGTGTAGCATgtgtgtagtatttacttgaacaagtttctttttgatttat-ttcatctatttccattcctattttgtgcat-atcattatg--tacaatactgtttttaacaga----------------------------------------------------
||| | || ||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |       ||| | ||  |  |  ||  || |  ||||  ||     |||||    | |     |||  ||||  | |  ||||   |                                                      
GGATCGAGTTTATACGATTTTCTTCGGAAAAACAATTATCGCTCCTTTCCCATTGATCTTGTCCGTGAGATTGGCTGGCAACTCTTGGAATGTGTAGCATgtgtgtagtctttgc-------agtcttttcattctacatgctcgtgcatttttatctgagttttgcttgtcactgagatggttacatcattagtttttgaatttcagctcttttcatttcttatggcaattttcttgtctatttttgttttgcag

upper sequence: GLYMA06G18530.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 6
GGACCAAGCTTATACGATTTTCTTCGGAAAAACAGTTATCGTTCATTTCCCATTGATCTTGTCCGTGAGATTGGCTGGCAACTATTGGAATGTGTAGCATgtgtgtagtatttacttgaacaagtttctttttgatttatttcatctatttccattcctattttgtgcatatcattatgtacaata-ctgtttttaacaga
||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||  |||||   | ||||| ||||| | |   |    |  || || ||  | | ||     | | ||  |||  |||  ||  | ||   |  
GGACCAAGCTTATACGATTTTCTACGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTGTTGGAATGTGTAGCATgtgtgtagtaaatacttttgctagtttttttttcaatccataatgcgtttgccttttgtgtattccatctcttatactgttgaatgtctactatttgtaa-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192330547|gb|FK021250.1|FK021250
EST:     CATTGATCTTGTCCGTGAGATTGGCTGGCAACTATTGGAATGTGTAGCAT                         TTATGCATGACTTACACATGATCCATACTGACCTGAAGCCGGAAAACATAC
genomic: CATTGATCTTGTCCGTGAGATTGGCTGGCAACTATTGGAATGTGTAGCATgtgtgtagta ... aaaattgcagTTATGCATGACTTACACATGATCCATACTGACCTGAAGCCGGAAAACATAC
EST: gi|15201058|gb|BI424670.1|BI424670
EST:     CATTGATCTTGTCCGTGAGATTGGCTGGCAACTATTGGAATGTGTAGCAT                         TTATGCATGACTTACACATGATCCATACTGACCTGAAGCCGGAAAACATAC
genomic: CATTGATCTTGTCCGTGAGATTGGCTGGCAACTATTGGAATGTGTAGCATgtgtgtagta ... aaaattgcagTTATGCATGACTTACACATGATCCATACTGACCTGAAGCCGGAAAACATAC