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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCTTTCTAAGCTGAAAGAGTCAGTGAAGTCAGATATCAGACAGACAGCTGTATGGAACACACTGGGTTTTATCCTTCTTAAAACTGGTCGTGTGAAGgtacaattatcttgtttgctctttttcttatgctttaatgttcttaaggcatatgcttcagcgtcagtatttgatgtgactacctttttccctttgcttgaaccaatgtgacttccaatgctggtgtag

Basic information

species Glycine max
transcript GLYMA06G18330.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254343234|gb|GR856938.1|GR856938
EST:     CTGTATGGAACACACTGGGTTTTATCCTTCTTAAAACTGGTCGTGTGAAG                         AGTGCTGTCTCAGTTTTGTCATCATTGTTGTCCATTGCTCCAGAGAACTAT
genomic: CTGTATGGAACACACTGGGTTTTATCCTTCTTAAAACTGGTCGTGTGAAGgtacaattat ... gctggtgtagAGTGCTGTCTCAGTTTTGTCATCATTGTTGTCCATTGCTCCAGAGAACTAT
EST: gi|21255944|gb|BQ452832.1|BQ452832
EST:     CTGTATGGAACACACTGGGTTTTATCCTTCTTAAAACTGGTCGTGTGAAG                         AGTGCTGTCTCAGTTTTGTCATCATTGTTGTCCATTGCTCCAGAGAACTAT
genomic: CTGTATGGAACACACTGGGTTTTATCCTTCTTAAAACTGGTCGTGTGAAGgtacaattat ... gctggtgtagAGTGCTGTCTCAGTTTTGTCATCATTGTTGTCCATTGCTCCAGAGAACTAT
EST: gi|7925508|gb|AW831534.1|AW831534
EST:     ATGGAACACACTGGGTTTTATCCTTCTTAAAACTGGTCGTGTGAAG                         AGTGCTGTCTCAGTTTTGTCATCATTGTTGTCCATTGCTCCAGAGAACTAT
genomic: ATGGAACACACTGGGTTTTATCCTTCTTAAAACTGGTCGTGTGAAGgtacaattat ... gctggtgtagAGTGCTGTCTCAGTTTTGTCATCATTGTTGTCCATTGCTCCAGAGAACTAT