Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTGAGTTTACATCTCCAAACCAAGAGCGGTTTCATCACTACAAGgttaagctcacattgccttgcttttgatatgcgacgagattacaagaatgtggtttggtgtattggattttgactatttggttatgttattttttggattttgatttgtttag

Basic information

species Glycine max
transcript GLYMA06G18170.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G18170.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G100815_T01 (Zea mays), 5'ss of exon 2
GTGGTGAGTTTACATCTCCAAACCAAGAGCGGTTTCATCACTACAAGgttaagctcacattgccttgcttttgatatgcgac-gagattacaagaatgtggtttggtgtattggattttgactatttggttatgttattttttggattttgatttgtttag
|||| |||||||| || ||||||||||| || |||||||| ||||||||      |  ||     |  |||   | ||  |  |  |||  ||||||||  | | | | ||  | |||  ||  || | |      |   | || || |            
GTGGGGAGTTTACTTCACCAAACCAAGAACGTTTTCATCATTACAAGgtaggaaactaatcatgatagtttaattttgttattgtcattttaagaatgttttcttg-gcatcaggtttacacc-ttcgttaggagcaaaatatgtatat------------

upper sequence: GLYMA06G18170.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G50310.1 (Arabidopsis thaliana), 5'ss of exon 5
GTGGTGAGTTTACATCTCCAAACCAAGAGCGGTTTCATCACTACAAGgttaagctcacattgccttgcttttgatatgcgacgagattacaagaatgtggtttggtgtattggattttgactatttggttatgttattttttggattttgatttgtttag
||||||| ||||||||||| || |||||||| || |||||||||||||| |     | ||| |  ||  || |  |   | | ||   |  ||  | |   ||  |   ||   |||| |   |  ||||   ||| ||| | |                
GTGGTGAATTTACATCTCCGAATCAAGAGCGTTTCCATCACTACAAGgtgagtagtatatttctgtgtgttagcca---gtccagtccattagtttttttatttctcatttttttttttatcttggggttggtttaatttatag----------------