1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GATGATGATGTGGATTTGTTCGGTGAAGAGACAGAAGAAGAGAAGAAGGCAGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACAAAAAAAAAAGAGTgtaagtttctttcttgtcactaattatctttgaactttatcctgtgctcttctccatataccactttgcaatggcattgattctctgttgattcccttttcag
species | Glycine max |
transcript | GLYMA06G17930.4 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACNNNNNNNNNNGAGT CTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTGEST: gi|213617811|gb|DB959395.1|DB959395
genomic: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACAAAAAAAAAAGAGTgtaagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTG
EST: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACNNNNNNNNNNGAGT CTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTGEST: gi|9259946|gb|BE348093.1|BE348093
genomic: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACAAAAAAAAAAGAGTgtaagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTG
EST: AGCAGAGGAACGGGCAACTGCAGTGAAGGCATCTACAAAANAAAAAGAGT CTGGGAAATCATTCTGT-CTGGTGGATGGGAAACCATGGEST: gi|298194444|gb|HO041092.1|HO041092
genomic: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACAAAAAAAAAAGAGTgtaagtttct ... cccttttcagCTGGGAAATCAT-CTGTTCTGTTGGATGTGAAACCATGG
EST: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACNNNNNNNNN-GAGT CTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTGEST: gi|13790786|gb|BG653377.1|BG653377
genomic: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACAAAAAAAAAAGAGTgtaagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTG
EST: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACNNNNNNNNNNGAGT CTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTGEST: gi|7232756|gb|AW568109.1|AW568109
genomic: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACAAAAAAAAAAGAGTgtaagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTG
EST: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACAAAAAAGAAAGAGT CTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTGEST: gi|208112180|gb|GD912851.1|GD912851
genomic: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACAAAAAAAAAAGAGTgtaagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTG
EST: ATCT-CAAANAAAAAAGAGT CTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTG
genomic: ATCTACAAAAAAAAAAGAGTgtaagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGATGATGTGGATTTGTTCGGTGAAGAGACAGAAGAAGAGAAGAAGGCAGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACAAAAAAAAAAGAGTgtaagtttctttcttgtcactaattatctttgaactttatcctgtgctcttctccatataccactttgcaatggcattgattctctgttgattcccttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG