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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCTGTAGCTTTCTTTTTGATATTGTATTGTGCTCCTCGCTTTGGCCAGACTAATATTTTAGTTTATATTGGAATATGCTCCATAATTGGATCCTTGACTgtaagtggctcctctttctacccaattcatctttggagtacttatagttgactaaactcaataccagaggtcatcttttgttttgcacttctgatagaatatcttgtttcccag

Basic information

species Glycine max
transcript GLYMA06G16670.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G16670.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0031g02960.t01 (Vitis vinifera), 5'ss of exon 5
CGCTGTAGCTTTCTTTTTGATATTGTATTGTGCTCCTCGCTTTGGCCAGACTAATATTTTAGTTTATATTGGAATATGCTCCATAATTGGATCCTTGACTgtaagtggctcctctttc-tacccaattcatctttggagtacttatagttgactaaactcaataccagaggtcatcttttgttt-tgcacttctgatag--aatatcttgtttcccag---------------------------------------------
 |||||| |  |  |  | || ||||||||||| || || | |||||| || ||||| || ||||||||||| |||||||| ||||||||||| ||||| ||||||        |||  |  | || | || |    | |  |  |  ||  |||   |      | |   |     | | | | ||  ||| ||| |   ||   |||   |  ||                                              
AGCTGTATCACTTGTACTCATCTTGTATTGTGCGCCCCGGTATGGCCAAACCAATATCTTGGTTTATATTGGCATATGCTCTATAATTGGATCATTGACAgtaagtaatcatggttttgtggctaacttatttccaaaat-ttcttgcttttctatttttgggctctgtcttgtcactgtatatgtgagcttatgacatttaaatccttaagtaacacatgatttagcttgctgattctaattgagcttctccccttatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254340100|gb|GR858225.1|GR858225
EST:     CTAATATTTTAGTTTATATTGGAATATGCTCCATAATTGGATCCTTGACT                         GTCATGAGCATAAAAGCCATTGGCATTGCTATAAGACTTACAATTGAGGGT
genomic: CTAATATTTTAGTTTATATTGGAATATGCTCCATAATTGGATCCTTGACTgtaagtggct ... tgtttcccagGTCATGAGCATAAAAGCCATTGGCATTGCTATAAGACTTACAATTGAGGGT