1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGGTCAGAAGCAGAGGGTTGCCATTGCTGGTGCTCTTGCTGAAGCTTGTAAAGTTCTGTTGTTGGATGAGCTCACAACATTCTTAGATGAAGCTGACCAGgtaatccccaagaattgtgatgttatatgctatacatgtcatatttgttgaaaagttatgaaaattgagaacctgaaaaacacggaaactggaaactagg...
species | Glycine max |
transcript | GLYMA06G15900.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAGTTCTGTTGTTGGATGAGCTCACAACATTCTTAGATGAAGCTGACCAG GTTGGGGTCATCAAAGCTGTTAGGAACTCAGTGGATACCTCTGCAGAAGTTEST: gi|208150429|gb|GD950866.1|GD950866
genomic: AAGTTCTGTTGTTGGATGAGCTCACAACATTCTTAGATGAAGCTGACCAGgtaatcccca ... ttcatgtaagGTTGGGGTCATCAAAGCTGTTAGGAACTCAGTGGATACCTCTGCAGAAGTT
EST: TTCTGTTGTTGGATGAGCTCACAACATTCTTAGATGAAGCTGACCAG GTTGGGGTCATCAAAGCTGTTAGGAACTCAGTGGATACCTCTGCAGAAGTTEST: gi|8826038|gb|BE209768.1|BE209768
genomic: TTCTGTTGTTGGATGAGCTCACAACATTCTTAGATGAAGCTGACCAGgtaatcccca ... ttcatgtaagGTTGGGGTCATCAAAGCTGTTAGGAACTCAGTGGATACCTCTGCAGAAGTT
EST: AAGTTCTGTTGTTGGATGAGCTCACAACATTCTTAGATGAAGCTGACCAG GTTGGGGTCATCAAAGCTGTTAGGAACTCAGTGGATACCTCTGCAGAAGTT
genomic: AAGTTCTGTTGTTGGATGAGCTCACAACATTCTTAGATGAAGCTGACCAGgtaatcccca ... ttcatgtaagGTTGGGGTCATCAAAGCTGTTAGGAACTCAGTGGATACCTCTGCAGAAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTCAGAAGCAGAGGGTTGCCATTGCTGGTGCTCTTGCTGAAGCTTGTAAAGTTCTGTTGTTGGATGAGCTCACAACATTCTTAGATGAAGCTGACCAGgtaatccccaagaattgtgatgttatatgctatacatgtcatatttgttgaaaagttatgaaaattgagaacctgaaaaacacggaaactggaaactagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaca