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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACCTCTAACTGGAGATGTAAGAAGGATCTGGGGGATTACTTGGCCGAAAGGAATATCATGGGAATTTgtgagtagtttatacaaaaagatgtttttgcgaacaaatgttgcttgctctctgcaatctgcatgactgaagttttcaattttgattttgtgggtgctttgtgatgcaacag

Basic information

species Glycine max
transcript GLYMA06G15510.3
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151406343|gb|EV276158.1|EV276158
EST:     TAAGAAGGATCTGGGGGATTACTTGGCCGAAAGGAATATCATGGGAATTT                         ATGATGTTGATACTCGTGCAATCACGCGCCGGTTGCGTCAAGATGGCAGTC
genomic: TAAGAAGGATCTGGGGGATTACTTGGCCGAAAGGAATATCATGGGAATTTgtgagtagtt ... gatgcaacagATGATGTTGATACTCGTGCAATCACGCGCCGGTTGCGTCAAGATGGCAGTC
EST: gi|213614361|gb|DB966963.1|DB966963
EST:     TAAGAAGGATCTGGGGGATTACTTGGCCGAAAGGAATATCATGGGAATTT                         ATGATGTTGATACTCGTGCAATCACGCGCCGGTTGCGTCAAGATGGCAGTC
genomic: TAAGAAGGATCTGGGGGATTACTTGGCCGAAAGGAATATCATGGGAATTTgtgagtagtt ... gatgcaacagATGATGTTGATACTCGTGCAATCACGCGCCGGTTGCGTCAAGATGGCAGTC
EST: gi|19271025|gb|BM887281.1|BM887281
EST:     TAAGAAGGATCTGGGGGATTACTTGGCCGAAAGGAATATCATGGGAATTT                         ATGATGTTGATACTCGTGCAATCACGCGCCGGTTGCGTCAAGATGGC
genomic: TAAGAAGGATCTGGGGGATTACTTGGCCGAAAGGAATATCATGGGAATTTgtgagtagtt ... gatgcaacagATGATGTTGATACTCGTGCAATCACGCGCCGGTTGCGTCAAGATGGC
EST: gi|16284806|gb|BI946280.1|BI946280
EST:     TAAGAAGGATCTAGGGGATTACTTGGCCGATAGGAATATCATGGGAATAG                         ATGATGATGATACTCATGCAATCACGCGCCGG
genomic: TAAGAAGGATCTGGGGGATTACTTGGCCGAAAGGAATATCATGGGAATTTgtgagtagtt ... gatgcaacagATGATGTTGATACTCGTGCAATCACGCGCCGG
EST: gi|16996720|gb|BM086092.1|BM086092
EST:     TAAGAAGGATCTGGGGGATTACTTGGCCGAAAGGAATATCATGGGAATTT                         ATGATGTTGATACTCGTGCAATCACGCGCCGGTTGCGTCAAGATGGCAGTC
genomic: TAAGAAGGATCTGGGGGATTACTTGGCCGAAAGGAATATCATGGGAATTTgtgagtagtt ... gatgcaacagATGATGTTGATACTCGTGCAATCACGCGCCGGTTGCGTCAAGATGGCAGTC
EST: gi|16348135|gb|BI973730.1|BI973730
EST:     TAAGAAGGATCTGGGGGATTACTTGGCCGAAAGGAATATCATGGGAATTT                         ATGATGTTGATACTCGTGCAATCACGCGCCGG
genomic: TAAGAAGGATCTGGGGGATTACTTGGCCGAAAGGAATATCATGGGAATTTgtgagtagtt ... gatgcaacagATGATGTTGATACTCGTGCAATCACGCGCCGG
EST: gi|15589927|gb|BI674543.1|BI674543
EST:     TAAGAAGGATCTGGGGGATTACTTGGCCGAAAGGAATATCATGGGAATTT                         ATGATGTTGATACTCGTGCAATCACGCGCCGGTTGCGTCAAGATGGCAGTC
genomic: TAAGAAGGATCTGGGGGATTACTTGGCCGAAAGGAATATCATGGGAATTTgtgagtagtt ... gatgcaacagATGATGTTGATACTCGTGCAATCACGCGCCGGTTGCGTCAAGATGGCAGTC
EST: gi|209727965|gb|BW666685.1|BW666685
EST:     TAAGAAGGATCTGGGGGATTACTTGGCCGAAAGGAATATCATGGGAATTT                         ATGATGTTGATACTCGTGCAATCACGCGCCGGTTGCGTCAAGATGGCAGTC
genomic: TAAGAAGGATCTGGGGGATTACTTGGCCGAAAGGAATATCATGGGAATTTgtgagtagtt ... gatgcaacagATGATGTTGATACTCGTGCAATCACGCGCCGGTTGCGTCAAGATGGCAGTC
EST: gi|19347243|gb|BM892123.1|BM892123
EST:     TAAGAAGGATCTGGGGGATTACTTGGCCGAAAGGAATATCATGGGAATTT                         ATGATGTTGATACTCGTGCAATCACGCGCCGGTTG
genomic: TAAGAAGGATCTGGGGGATTACTTGGCCGAAAGGAATATCATGGGAATTTgtgagtagtt ... gatgcaacagATGATGTTGATACTCGTGCAATCACGCGCCGGTTG
EST: gi|16283309|gb|BI945483.1|BI945483
EST:     TAAGAAGGATCTGGGGGATTACTTGGCCGAAAGGAATATCATGGGAATTT                         ATGATGTTGATACTCGTGCAATCACGCGCCGGTTGCGTCAAGATGGCAGTC
genomic: TAAGAAGGATCTGGGGGATTACTTGGCCGAAAGGAATATCATGGGAATTTgtgagtagtt ... gatgcaacagATGATGTTGATACTCGTGCAATCACGCGCCGGTTGCGTCAAGATGGCAGTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TACCTCTAACTGGAGATGTAAGAAGGATCTGGGGGATTACTTGGCCGAAAGGAATATCATGGGAATTTgtgagtagtttatacaaaaagatgtttttgcgaacaaatgttgcttgctctctgcaatctgcatgactgaagttttcaattttgattttgtgggtgctttgtgatgcaacag

- - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - AAGGAA