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TTTGGAGACTACTCGCCATGTTTCAATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGGgtaagaacttgtgtaatattgtatgacatttgtatctctaaatgtagttgtttgatggcttgtattttaacaggcctatttatttataagacaagctgct...
species | Glycine max |
transcript | GLYMA06G15380.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGG ATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTEST: gi|254343936|gb|GR857692.1|GR857692
genomic: ATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGGgtaagaactt ... tctcatgcagATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCT
EST: GATCACAATTACC-TGTCAAAGAAAAGAATGGGATACGTCATCCCGCGGG ATACCAACATCCTCTTCCAGTTGATCAAGTAAAACC-TTAAATGAATATGEST: gi|298172713|gb|HO019753.1|HO019753
genomic: GATCACAATTACCTTGTCAAAG-AAAGAATTGGATACGTCAT-CCGCGGGgtaagaactt ... tctcatgcagATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATG
EST: ATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGG ATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAEST: gi|120530869|gb|EH259002.1|EH259002
genomic: ATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGGgtaagaactt ... tctcatgcagATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGA
EST: ATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGG ATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAA-ATGAEST: gi|15337539|gb|BI498195.1|BI498195
genomic: ATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGGgtaagaactt ... tctcatgcagATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGA
EST: ATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGG ATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAEST: gi|254343935|gb|GR857691.1|GR857691
genomic: ATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGGgtaagaactt ... tctcatgcagATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGA
EST: ATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGG ATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAEST: gi|26268500|gb|CA819563.1|CA819563
genomic: ATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGGgtaagaactt ... tctcatgcagATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGA
EST: ATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGG ATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAEST: gi|120534428|gb|EH262561.1|EH262561
genomic: ATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGGgtaagaactt ... tctcatgcagATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGA
EST: ATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGG ATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAA-ATGAEST: gi|120534511|gb|EH262644.1|EH262644
genomic: ATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGGgtaagaactt ... tctcatgcagATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGA
EST: ATGATCACAATTACCTTGTCAAAGAAAGAATNGGATACGTCATCCGCGGG ATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAA-ATGAEST: gi|24136070|gb|BU926580.1|BU926580
genomic: ATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGGgtaagaactt ... tctcatgcagATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGA
EST: AATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGG ATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAEST: gi|298175747|gb|HO018344.1|HO018344
genomic: AATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGGgtaagaactt ... tctcatgcagATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGA
EST: ATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGG ATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAEST: gi|298186819|gb|HO037452.1|HO037452
genomic: ATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGGgtaagaactt ... tctcatgcagATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGA
EST: ATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGG ATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAEST: gi|20449683|gb|BQ253807.1|BQ253807
genomic: ATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGGgtaagaactt ... tctcatgcagATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGA
EST: ATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGG ATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGA
genomic: ATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGGgtaagaactt ... tctcatgcagATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGGAGACTACTCGCCATGTTTCAATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGGgtaagaacttgtgtaatattgtatgacatttgtatctctaaatgtagttgtttgatggcttgtattttaacaggcctatttatttataagacaagctgct
- - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - AAAGAA