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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGAAACTTTTGGCGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgtacgggacattctactttttccttgagtaaggacattaattattggccactaatttcatatgttgctatttagttgctgatttgaaaatctctttcatttaattgtgcag

Basic information

species Glycine max
transcript GLYMA06G15330.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G15330.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G09900.2 (Arabidopsis thaliana), 5'ss of exon 5
GTGGAAACTTTTGGCGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgtacgggacattctactttttccttgagtaaggacattaattattggccactaatttcatatgttgctatttagttgctgatttgaaaatctctttcatttaattgtgcag
||||| || ||||| || ||||| |||||||||||||| ||||| || ||||||||||||  |||| || |    || | |||         |||||| ||| ||   |  |||| |   |||         || | | |   |||    | |  |  || | |  ||
GTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGCATTTATCCTTGAACAAgta-aggac-ttgtgtagttacgttgca-------attaataatttgctggtgttttctttcattg---------tgataactatcaaactattgtggtcaaactttaaag

upper sequence: GLYMA06G15330.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G64760.2 (Arabidopsis thaliana), 5'ss of exon 5
GTGGAAACTTTTGGCGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgtacgggacattctactttttccttgagtaaggacattaattattggccactaatttcatatgttgctatttagttgctgatttgaaaatctctttcatttaattgtgcag
||||| || ||||| || ||||| |||||||||||||| || ||||||||||||||||||   ||| ||||  | | |  |    |       ||||   |||  |  |    |    | ||| |  |  |||| |||||  ||    |  |   |  | || || ||
GTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGCTTTCATTCTTGAACAAgta--agactttctgttatcttttcatatt----tcttaagctttgtgctttgtgctttgttcttgtttgtatgttg-tgattctaattattggtgtgtaaacttctgaag

upper sequence: GLYMA06G15330.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0031g01970.t01 (Vitis vinifera), 5'ss of exon 5
GTGGAAACTTTTGGCGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgtacgggacattctacttt-ttccttgagtaaggacattaattattggc-cactaatttcatatgttgctattta-gttgctgatttgaaaatctctttcatttaattgtgcag------------------------------------------------
|||||||| ||||| || ||||| |||||||| ||||| ||||||||||||||||||||||| |  ||  |  ||  ||  |    |||  || |  |  |||    |  | |||     | |   || ||       | ||| | || | | ||| ||||    || ||                                                 
GTGGAAACATTTGGTGCAATGGCAAAAACTGAAAAAATTGCATTCATTCTTGAACAAgtacgtgttatcttctttcattgttcttttaattacttctaccatttattcttttattgttcttttaattacttgtaccatttattcgtaact-tattttatttttgggttcaaagttgataatgctactttttatgtaataatgttgaaattacttttcag

upper sequence: GLYMA06G15330.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S257_89V6.2 (Physcomitrella patens), 5'ss of exon 5
GTGGAAACTTTTGGCGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgtacgggacattctactttttc-------cttgagtaaggacattaattattggccactaatttcatatgttg---ctatttagttgctgatttgaaaatct--ctttcatttaattgtg--cag-------------------------
|||||||||||||| |||||||| ||||||||||| || || |||||||||||||||||| ||    || ||  ||| |        || |  |   || ||   | | |   |   | |   | | |||    | || || ||    || |||  |||  |  | ||||  ||     |||                         
GTGGAAACTTTTGGTGCCATGGCAAAAACTGAGAAGATTGCTTTCATTCTTGAACAAgtaaggatttttttatatttgcaatcctgttttaccagctactttgcgtttggtttaaatagtatttgtattgaagttcttgagctggcacttcgaagttcttaccgttattttgttagagccagtactgatagtagggtggtgtgccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|41146268|gb|CK606479.1|CK606479
EST:     CTTTTGGCGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACTGCCAGGATTATGTTCGTGCACAGATACTCTCC
genomic: CTTTTGGCGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgtacgggaca ... aattgtgcagGTTCGTTTGTGTCTAGACTGCCAGGATTATGTTCGTGCACAGATACTCTCA
EST: gi|26048081|gb|CA784677.1|CA784677
EST:     CTTTTGGCGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACTGCCAGGATTATGTTCGTGCACAGATACTCTCA
genomic: CTTTTGGCGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgtacgggaca ... aattgtgcagGTTCGTTTGTGTCTAGACTGCCAGGATTATGTTCGTGCACAGATACTCTCA
EST: gi|26048108|gb|CA784697.1|CA784697
EST:     CTTTTGGCGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACTGCCAGGATTATGTTCGTGCACAGATACTCTCA
genomic: CTTTTGGCGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgtacgggaca ... aattgtgcagGTTCGTTTGTGTCTAGACTGCCAGGATTATGTTCGTGCACAGATACTCTCA