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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGGTGTCGGGATTGCTACTGTCACAGATTTGCAGCTCAATGCTCTGGGCTCTTTCTTATCTTTTCTCGCAGTGATTACAACTTGTGTTGCTCAGATTgtatccttttaaaataatttccaattgcattaacacctaagttttgtgatagattgactagaaacatatatagtggggacttaattttgaacctgttcca...

Basic information

species Glycine max
transcript GLYMA06G14970.2
intron # 5
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G14970.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv13s0067g02970.t01 (Vitis vinifera), 5'ss of exon 6
TTTGGGTGTCGGGATTGCTACTGTCACAGATTTGCAGCTCAATGCTCTGGGCTCTTTCTTATCTTTTCTCGCAGTGATTACAACTTGTGTTGCTCAGATTgtatcctt--ttaaaataatttccaattgcattaacacctaa-gttttgtgatagattgactagaaacat-atatagtggggacttaattttgaacctgttcca
| |||||||||| ||||| || || || ||| ||||||||||||| ||||||||| | |||||| | |||||||| |||||||| ||  |||||||||||||||||||   | || |     ||       | | ||  ||   |||| |  |    |   ||   |  | | ||         |||| ||| | | | |    
TATGGGTGTCGGAATTGCAACCGTTACTGATCTGCAGCTCAATGCCCTGGGCTCTATTTTATCTGTCCTCGCAGTTATTACAACATGCATTGCTCAGATTgtatccttaactgaagttgccacctcccttttcaccatttagtattttctattgagatatgtatccatgttagatcaaaacagtttaaattttaccatat----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21677608|gb|BQ629959.1|BQ629959
EST:     GCTCTTTCTTATCTTTTCTCGCAGTGATTACAACTTGTGTTGCTCAGATT                         ATGACAAATACTATCCAGAAGAAGTACAAGGTTTCTTCCACCCAGCTTCTG
genomic: GCTCTTTCTTATCTTTTCTCGCAGTGATTACAACTTGTGTTGCTCAGATTgtatcctttt ... tggtttttagATGACAAATACTATCCAGAAGAAGTACAAGGTTTCTTCCACCCAGCTTCTG
EST: gi|254314907|gb|GR829900.1|GR829900
EST:     GCTCTTTCTTATCTTTTCTCGCAGTGATTACAACTTGTGTTGCTCAGATT                         ATGACAAATACTATCCAGAAGAAGTACAAAGGTTTCTTCCACCCAGCTTCT
genomic: GCTCTTTCTTATCTTTTCTCGCAGTGATTACAACTTGTGTTGCTCAGATTgtatcctttt ... tggtttttagATGACAAATACTATCCAGAAGAAGTACAA-GGTTTCTTCCACCCAGCTTCT
EST: gi|22524332|gb|BU083143.1|BU083143
EST:     GCTCTTTCTTATCTTTTCTCGCAGCGATTACAACTTGTGTTGCTCAGATT                         ATGACAAATACTATCCACAAGAAGTACAAGGTTTCTTCCACCCAGCTTCTG
genomic: GCTCTTTCTTATCTTTTCTCGCAGTGATTACAACTTGTGTTGCTCAGATTgtatcctttt ... tggtttttagATGACAAATACTATCCAGAAGAAGTACAAGGTTTCTTCCACCCAGCTTCTG
EST: gi|16348409|gb|BI974004.1|BI974004
EST:     CTTTCTTATCTTTTCTCGCAGTGATTACAACTTGTGTTGCTCAGATT                         ATGACAAATACTATCCAGAAGAAGTACAAGGTTTCTTCCACCCAGCTTCTG
genomic: CTTTCTTATCTTTTCTCGCAGTGATTACAACTTGTGTTGCTCAGATTgtatcctttt ... tggtttttagATGACAAATACTATCCAGAAGAAGTACAAGGTTTCTTCCACCCAGCTTCTG
EST: gi|8403988|gb|BE059622.1|BE059622
EST:     GCTCTTTCTTATCTTTTCTCGCAGTGATTACAACTTGTGTTGCTCAGATT                         ATGACAAATACTATCCAGAAGAAGTACAAGGTTTCTTCCACCCAGCTTCTG
genomic: GCTCTTTCTTATCTTTTCTCGCAGTGATTACAACTTGTGTTGCTCAGATTgtatcctttt ... tggtttttagATGACAAATACTATCCAGAAGAAGTACAAGGTTTCTTCCACCCAGCTTCTG
EST: gi|254324663|gb|GR834088.1|GR834088
EST:     GCTCTTTCTTATCTTTTCTCGCAGTGATTACAACTTGTGTTGCTCAGATT                         ATGACAAATACTATCCAGAAGAAGTACAAGGTTTCTTCCACCCAGCTTCTG
genomic: GCTCTTTCTTATCTTTTCTCGCAGTGATTACAACTTGTGTTGCTCAGATTgtatcctttt ... tggtttttagATGACAAATACTATCCAGAAGAAGTACAAGGTTTCTTCCACCCAGCTTCTG
EST: gi|208175636|gb|GD973419.1|GD973419
EST:     GCTCTTTCTTATCTTTTCTCGCAGTGATTACAACTTGTGTTGCTCAGATT                         ATGACAAATACTATCCAGAAGAAGTACAAGGTTTCTTCCACCCAGCTTCTG
genomic: GCTCTTTCTTATCTTTTCTCGCAGTGATTACAACTTGTGTTGCTCAGATTgtatcctttt ... tggtttttagATGACAAATACTATCCAGAAGAAGTACAAGGTTTCTTCCACCCAGCTTCTG