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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACGTGGATATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGTGGCAGCGGCGCAGGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccattaggataatcttttttatttgatatagaaaaggacagagggttaaaacactatttttttccttctgactgcacatccatttagctatgct...

Basic information

species Glycine max
transcript GLYMA06G14060.3
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207808310|gb|GD777175.1|GD777175
EST:     GTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: GTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|193388580|gb|FK357469.1|FK357469
EST:     GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|193358175|gb|FK322757.1|FK322757
EST:     GGCGGGGGTCGTTTTGGCATCTCACGCCAATTCTGAATTTCGAG                         TTATTGTTCGCGGGCTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: GGCGGGGGTCGTTTTGGCATCTCACGCC-ATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|14011762|gb|BG726684.1|BG726684
EST:     GTTTTGGCATCTCACGCCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: GTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|208329235|gb|GE131233.1|GE131233
EST:     GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|193672715|gb|FK619799.1|FK619799
EST:     GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|207718222|gb|GD698814.1|GD698814
EST:     CCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: CCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|207809663|gb|GD782339.1|GD782339
EST:     GGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: GGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|207718815|gb|GD700163.1|GD700163
EST:     GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|208148031|gb|GD949688.1|GD949688
EST:     GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|208152909|gb|GD945268.1|GD945268
EST:     GGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: GGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|207703994|gb|GD684962.1|GD684962
EST:     CTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: CTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|193443241|gb|FK405249.1|FK405249
EST:     GGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: GGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|207769839|gb|GD742153.1|GD742153
EST:     GGCGGGGGTCGTTTTGGCTATTCTTCTACGCCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: GGCGGGGGTCGTTTTGGC-A-TC-TC-ACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|31468970|gb|CD410998.1|CD410998
EST:     CGGC-CAGGC-GGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATCTTCTGCATCCTGGCAAGATTTGAAG
genomic: CGGCGCAGGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|207749123|gb|GD720527.1|GD720527
EST:     GGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: GGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|193661822|gb|FK605240.1|FK605240
EST:     GGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: GGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|193558135|gb|FK512434.1|FK512434
EST:     GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG                         TTATTGTTCGTGGACTCCCATCTT
genomic: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTT
EST: gi|208305633|gb|GE109074.1|GE109074
EST:     CGGCGCAGGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: CGGCGCAGGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|208095348|gb|GD892064.1|GD892064
EST:     GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG                         TTATTGTTCGTGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|208107067|gb|GD902908.1|GD902908
EST:     CGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: CGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|193393546|gb|FK360644.1|FK360644
EST:     GGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATACTTACTGCATCTTGGCAAGATTTGAAG
genomic: GGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCAT-CTT-CTGCATCTTGGCAAGATTTGAAG
EST: gi|193702518|gb|FK635184.1|FK635184
EST:     CCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: CCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|193576540|gb|FK533679.1|FK533679
EST:     GCAGGC-GGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: GCAGGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|208276146|gb|GE074328.1|GE074328
EST:     CGGCGCAGGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: CGGCGCAGGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|208307858|gb|GE105422.1|GE105422
EST:     GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|208068554|gb|GD862736.1|GD862736
EST:     GGCGGGGG-CGTTTTGGCATCTCACGCCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|208234156|gb|GE031015.1|GE031015
EST:     GTTTTGGCATCTCACGCCATTCTGAATTTCGAG                         TTATCGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: GTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|193379789|gb|FK345347.1|FK345347
EST:     GGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG                         TTATTGTTCGTGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: GGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|193414754|gb|FK381394.1|FK381394
EST:     GGGGTCGTTTTGGTCTATCTCACGCCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: GGGGTCGTTTTGG-C-ATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|193466946|gb|FK430337.1|FK430337
EST:     GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|208089216|gb|GD887051.1|GD887051
EST:     GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|208198398|gb|GD997589.1|GD997589
EST:     GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|208049046|gb|GD845429.1|GD845429
EST:     GGCGGGGGTCGTTTTGGCTATCTCACGCCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: GGCGGGGGTCGTTTTGGC-ATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|207717122|gb|GD697616.1|GD697616
EST:     GGCGGGGGTCGTTTTTGGCATCTCACGCCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: GGCGGGGGTCG-TTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|207713685|gb|GD695360.1|GD695360
EST:     GTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: GTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|193589473|gb|FK544189.1|FK544189
EST:     GTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: GTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|193553739|gb|FK509074.1|FK509074
EST:     CCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: CCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACT-CCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: gi|193717067|gb|FK654695.1|FK654695
EST:     GCGGGGG-CGTTTTGGCATCTCACGCCATTCTGAATTTCGAG                         TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: GCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG