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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCCTTCATTGAGTTCACAGATGATGgtaacgttgctgccaaatgttgctcatatgctgtaattattattgatatttcactgtattaagggtgttatgcctgcag

Basic information

species Glycine max
transcript GLYMA06G14050.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193542464|gb|FK497570.1|FK497570
EST:     GATCCTAACTCTATTCTTCGATTTGCCTTCATTGAGTTCACAGATGATAG                         AAGGTGCAAGGGC
genomic: GATCCTAACTCTATTCTTCGATTTGCCTTCATTGAGTTCACAGATGAT-Ggtaacgttgc ... atgcctgcagAAGGTGCAAGGGC
EST: gi|208297539|gb|GE092810.1|GE092810
EST:     AGATCCTAACTCTATTCTTCGATTTGCCTTCATTGAGTTCACAGATGATG                         AAGGTGCAAGGGCTGCTTTGAG
genomic: AGATCCTAACTCTATTCTTCGATTTGCCTTCATTGAGTTCACAGATGATGgtaacgttgc ... atgcctgcagAAGGTGCAAGGGCTGCTTTGAG
EST: gi|193559320|gb|FK513783.1|FK513783
EST:     AGATCCTAACTCTATTCTTCGATTTGCCTTCATTGAGTTCACAGATGATG                         AAGGTGCAAGGGCTGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACC
genomic: AGATCCTAACTCTATTCTTCGATTTGCCTTCATTGAGTTCACAGATGATGgtaacgttgc ... atgcctgcagAAGGTGCAAGGGCTGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACC
EST: gi|193387164|gb|FK352959.1|FK352959
EST:     AGATCCTAACTCTATTCTTCGATTTGCCTTCATTGAGTTCACAGATGATG                         AAGGTGCAAGGGCTGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACC
genomic: AGATCCTAACTCTATTCTTCGATTTGCCTTCATTGAGTTCACAGATGATGgtaacgttgc ... atgcctgcagAAGGTGCAAGGGCTGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACC
EST: gi|193378815|gb|FK345156.1|FK345156
EST:     AGATCCTAACTCTATTCTTCGATTTGCCTTCATTGAGTTCACAGATGATG                         AAGGTGCAAGGGCTGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACC
genomic: AGATCCTAACTCTATTCTTCGATTTGCCTTCATTGAGTTCACAGATGATGgtaacgttgc ... atgcctgcagAAGGTGCAAGGGCTGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACC
EST: gi|208284307|gb|GE083707.1|GE083707
EST:     AGATCCTAACTCTATTCTTCGATTTGCCTTCATTGAGTTCACAGATGATG                         AAGGTGCAAGGGCTGCTTTAGAAGCCTGTCTG
genomic: AGATCCTAACTCTATTCTTCGATTTGCCTTCATTGAGTTCACAGATGATGgtaacgttgc ... atgcctgcagAAGGTGCAAGGGCTGCTTT-GA-GCCTGTCTG
EST: gi|151397590|gb|EV267463.1|EV267463
EST:     AGATCCTAACTCTATTCTTCGATTTGCCTTCATTGAGTTCACAGATGATG                         AAGGTGCAAGGGCTGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACC
genomic: AGATCCTAACTCTATTCTTCGATTTGCCTTCATTGAGTTCACAGATGATGgtaacgttgc ... atgcctgcagAAGGTGCAAGGGCTGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACC
EST: gi|21677144|gb|BQ629495.1|BQ629495
EST:     AGATCCTAACTCTATTCTTCGATTTGCCTTCATTGAGTTCACAGATGATG                         AAGGTGCAAGGGCTGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACC
genomic: AGATCCTAACTCTATTCTTCGATTTGCCTTCATTGAGTTCACAGATGATGgtaacgttgc ... atgcctgcagAAGGTGCAAGGGCTGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACC
EST: gi|208291734|gb|GE090630.1|GE090630
EST:     GATCCTAACTCTATTCTTCGATTTGCCTTCATTGAGTTCACAGATGATAG                         AAGGTGCAAGG
genomic: GATCCTAACTCTATTCTTCGATTTGCCTTCATTGAGTTCACAGATGAT-Ggtaacgttgc ... atgcctgcagAAGGTGCAAGG
EST: gi|15661924|gb|BI699295.1|BI699295
EST:     AGATCCTAACTCTATTCTTCGATTTGCCTTCATTGAGTTCACAGATGATG                         AAGGTGCAAGGGCTGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACC
genomic: AGATCCTAACTCTATTCTTCGATTTGCCTTCATTGAGTTCACAGATGATGgtaacgttgc ... atgcctgcagAAGGTGCAAGGGCTGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACC
EST: gi|254343883|gb|GR857639.1|GR857639
EST:     AGATCCTAACTCTATTCTTCGATTTGCCTTCATTGAGTTCACAGATGATG                         AAGGTGCAAGGGCTGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACC
genomic: AGATCCTAACTCTATTCTTCGATTTGCCTTCATTGAGTTCACAGATGATGgtaacgttgc ... atgcctgcagAAGGTGCAAGGGCTGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCCTTCATTGAGTTCACAGATGATGgtaacgttgctgccaaatgttgctcatatgctgtaattattattgatatttcactgtattaagggtgttatgcctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG