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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTGACATTACAATTTTGGGTGGCAATGATTTTTATTCATATAGGAATGAGgtaatttacccttttgttttgatgatttgagcttttaaaagcttagaccaagatatttatgtcttaacaaatgcttctcctgcag

Basic information

species Glycine max
transcript GLYMA06G13260.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G13260.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0012g02530.t01 (Vitis vinifera), 5'ss of exon 5
GTCTTGACATTACAATTTTGGGTGGCAATGATTTTTATTCATATAGGAATGAGgtaatttacccttttgtt-----ttgatgatttga--gcttttaaaagcttagaccaagatatttatgtcttaacaaatgcttctcctgcag--------
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GTCTTGATATTACAATCTTAGGTTGCAATGATTTTTATTCATACAGGAATTATgtgagttccctttcagttctttcttatttatttatttatttttaaacttctcaatctattgagttaatattttgtggctctttatctttttttttttttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298197323|gb|HO044802.1|HO044802
EST:     TTGACATTACAATTTTGGGTGGCAATGATTTTTATTCATATAGGAATGAG                         ATTGAGAGACGTGGACTCCCTTTG
genomic: TTGACATTACAATTTTGGGTGGCAATGATTTTTATTCATATAGGAATGAGgtaatttacc ... tctcctgcagATTGAGAGACGTGGACTCCCTTTG
EST: gi|151395244|gb|EV265115.1|EV265115
EST:     TTGACATTACAATTTTGGGTGGCAATGATTTTTATTCATATAGGAATGAG                         ATTGAGAGACGTGGACTCCCTTTGACACCGGAATCGTTGGCCACCCTTCTG
genomic: TTGACATTACAATTTTGGGTGGCAATGATTTTTATTCATATAGGAATGAGgtaatttacc ... tctcctgcagATTGAGAGACGTGGACTCCCTTTGACACCGGAATCGTTGGCCACCCTTCTG