Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACTGAAGAGAAAGCACGGAAACTGCTGCATAATGTGTCTTCTCTGCTGAAACCTGGGGGTTATTTTCTTGGTATTACTCCTGACTCATCTACCATATGgtatgagagttctcagaggcctattattcttgcatgcagtctctctctgttgtattcttttttatttgctctattgatggaagaaaattcatttgattta...

Basic information

species Glycine max
transcript GLYMA06G13240.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G13240.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G52210.2 (Arabidopsis thaliana), 5'ss of exon 5
AGACTGAAGAGAAAGCACGGAAACTGCTGCATAATGTGTCTTCTCTGCTGAAACCTGGGGGTTATTTTCTTGGTATTACTCCTGACTCATCTACCATATGgtatgagagttctcagaggcctattattcttgcatgcagtctctctctgttgtattcttttttatttgctctattgatggaagaaaattcatttgattta
| ||||| ||||  ||  | | ||| ||   ||||||  | | | | |||||||| |||||||||||| | ||||| ||||||||||| ||||| || |||||     ||| || |   |     ||        ||| |   |  |   | |||| ||  | | |||  ||   | |     | | |    |  |    
AAACTGAGGAGAGTGCGAGAAGACTCCTAACTAATGTAGCATGTTTACTGAAACCAGGGGGTTATTTTTTCGGTATCACTCCTGACTCGTCTACGATTTGgtaatgatgttttctgtatcaatgcatcaacttcagcatttgattgcctatatatt-ttgatcagttggactgc-gctccttaacattctggtcaaacag

upper sequence: GLYMA06G13240.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv13s0074g00190.t01 (Vitis vinifera), 5'ss of exon 5
AGACTGAAGAGAAAGCACGGAAACTGCTGCATAATGTGTCTTCTCTGCTGAAACCTGGGGGTTATTTTCTTGGTATTACTCCTGACTCATCTACCATATGgtatgagagttctcagag-gcctattattcttgcatgcagtctctctctgttgtattcttttttatttgctctattgatggaagaaaattcattt--gattta
| |  ||||| |||| | | | ||| || ||||| ||| | ||| |||||||||| |||||||| ||| |||| ||||| ||||||||||||||||||||||||   ||  ||  ||    | |  |  ||    |    | ||  |  |   | || ||| |    | |   | | ||     |   | |||    | ||| 
AAAACGAAGATAAAGGAAGAAGACTTCTACATAACGTGGCATCTTTGCTGAAACCAGGGGGTTACTTTTTTGGCATTACACCTGACTCATCTACCATATGgtat---agccctatgactatcaaagaccctattgttttttttcctttggacctgttgtttctggagttcataacttatattgcatcctgcatgcagggtttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8669741|gb|BE190848.1|BE190848
EST:     AAACCTGGGGGTTATTTTCTTGGTATTACTCCTGACTCATCTACCATATG                         GGCCAAGTACCAGAGGAATGTTGAAGCCTATCACAACAAAAGCAGCAGCAT
genomic: AAACCTGGGGGTTATTTTCTTGGTATTACTCCTGACTCATCTACCATATGgtatgagagt ... agtcatgtagGGCCAAGTACCAGAGGAATGTTGAAGCCTATCACAACAAAAGCAGCAGCAT
EST: gi|298188464|gb|HO035157.1|HO035157
EST:     AAACCTGGGGGTTATTTTCTTGGTATTACTCCTGACTCATCTACCATATG                         GGCCAAGTACCAGAGGAATGTTGAAGCCTATCACAACAAAAGCAGCAGCAT
genomic: AAACCTGGGGGTTATTTTCTTGGTATTACTCCTGACTCATCTACCATATGgtatgagagt ... agtcatgtagGGCCAAGTACCAGAGGAATGTTGAAGCCTATCACAACAAAAGCAGCAGCAT
EST: gi|151396980|gb|EV266853.1|EV266853
EST:     AAACCTGGGGGTTATTTTCTTGGTATTACTCCTGACTCATCTACCATATG                         GGCCAAGTACCAGAGGAATGTTGAAGCCTATCACAACAAAAGCAGCAGCAT
genomic: AAACCTGGGGGTTATTTTCTTGGTATTACTCCTGACTCATCTACCATATGgtatgagagt ... agtcatgtagGGCCAAGTACCAGAGGAATGTTGAAGCCTATCACAACAAAAGCAGCAGCAT