Sequence
atgc intronic sequence ATGC exonic sequenceTGTACTTGATGGAATAGTTCAATTGACTGAGAGGGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCCCTCTGTTCAATTCATTCGCCCAAAAATgtaaagtcatttgatccgatgattttgcttctgagcttatgttatgactgtcaaataaaaaatattaatcgcttcagtttcaatttaaaagtatggttcc...
Basic information
species | Glycine max |
transcript | GLYMA06G13210.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G13210.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os02g15550.1 (Oryza sativa), 5'ss of exon 5
TGTACTTGATGGAATAGTTCAATTGACTGAGAGGGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCCCTCTGTTCAATTCATTCGCCCAAAAATgtaaagtcatttgatccgatgattttgcttctgagcttatgttatgactgtcaa-ataaaaaatattaatcgcttcagtttcaatttaaaagtatggttcc-----------------------------------------------------------
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TGTCCTTGATGGTATTGTCCAGTTGACTGATAAGGATGAATGTGCGTACCAGGAAATGATTACTCACCTTCCGCTTTGCTCAATTCCATCCCCAAAGAAAgtaagg--actccatttattttttttccattagaggtgaaattaacacttttgacagactcgaaattgattgtcttaaatt-attttcttccttttatccttacttctatagaaaattttagtttggtcactaatgttctttggacctaccaaatttcag
upper sequence: GLYMA06G13210.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G120578_T02 (Zea mays), 5'ss of exon 4
TGTACTTGATGGAATAGTTCAATTGACTGAGAGGGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCCCTCTGTTCAATTCATTCGCCCAAAAATgtaaagtcatttgatccgatgattttgcttctgagcttatgttat-gactgtcaaa--taaaaaatattaatcgcttcagtttcaatttaaaagtatggttcc---------------------------------------------------------
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TGTGCTTGATGGTATTGTTCAATTGACTGATAAGGATGAATGTGCGTACCAGGAAATGATTACTCACCTCCCACTCTGTTCAATTCCATCCCCTAAAAAGgtatatctccttatccttgctttttcccaatattgtgaatatcatagacaggctgtgttgcttaacataaatcgattcacacggaatatttctttttacctgcacttgcatggaaactgtagcatgctagcaacttatattattaggaactactttgcag
upper sequence: GLYMA06G13210.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G060896_T04 (Zea mays), 5'ss of exon 5
TGTACTTGATGGAATAGTTCAATTGACTGAGAGGGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCCCTCTGTTCAATTCATTCGCCCAAAAATgtaaagtcatttgatccgatgattttgcttctgagcttatgttatgactgtcaaataaaaaatattaatcgcttcagtttcaatttaaaagtat----ggttcc----------------------------------------------------------------------------------
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TGTGCTTGATGGTATTGTTCAGTTGACTGACAAGGATGAATGTGCATACCAGGAAATGATTACTCACCTGCCACTTTGCTCAATTCCATCCCCTAAAAAAgtat-gcctcctgatctca--gtttttcctcaa----tattgtaaaattgtagagaacgctgtgctgattggcagaaatccattggaagactttctgcagctctatctcagcatatgggatatttctttttacctgaatttgaatggaaactttggtggcttatgtccttaagaaatacttcgcag
upper sequence: GLYMA06G13210.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv16s0050g02670.t01 (Vitis vinifera), 5'ss of exon 5
TGTACTTGATGGAATAGTTCAATTGACTGAGAGGGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCCCTCTGTTCAATTCATTCGCCCAAAAATgtaaagtcatttgatccgatgattttgcttctgagcttatgttatgactgtcaaataaaaaatattaatcgcttcagtttca-atttaaaagtatggttcc
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TGTGCTTGATGGCATTGTTCAGTTGAGCGAGAAAGATGAATGTGCCTATCAGGAGATGATTGCTCACCTTCCCCTTTGTTCAATTGAATCCCCCAAGAGAgtaatttcactatttccaagcattggagtttt-attccatgttgtcaatgttctccttttgacttggattatatctttctcacaaccatttttaatttgccMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151394500|gb|EV264371.1|EV264371EST: AGGAGATGATAGCTCATCTTCCCCTCTGTTCAATTCATTCGCCCAAAAAT GTTTTAGTTGTTGGTGGTGGAGATGGCGGTGTACTAAGGGAAGTAGCCCGC
genomic: AGGAGATGATAGCTCATCTTCCCCTCTGTTCAATTCATTCGCCCAAAAATgtaaagtcat ... cttcattcagGTTTTAGTTGTTGGTGGTGGAGATGGCGGTGTACTAAGGGAAGTAGCCCGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTACTTGATGGAATAGTTCAATTGACTGAGAGGGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCCCTCTGTTCAATTCATTCGCCCAAAAATgtaaagtcatttgatccgatgattttgcttctgagcttatgttatgactgtcaaataaaaaatattaatcgcttcagtttcaatttaaaagtatggttcc
- - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaaa