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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTGTGGAGTTCATGCCCTTCTTCTTGTCGCTGTTTGTGTTTCTCTGTGGCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCAgtaagtcactttgcaattttaacttaacaattgtgcatagagctggggcaaaatggaccggtcctgtaaggtcggcctgggctgagtttgaatcagaaaa...

Basic information

species Glycine max
transcript GLYMA06G12740.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G12740.2 (Glycine max), 5'ss of exon 5
lower sequence: AT1G21460.1 (Arabidopsis thaliana), 5'ss of exon 5
GAGTGTGGAGTTCATGCCCTTCTTCTTGTCGCTGTTTGTGTTTCTCTGTGGCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCAgtaagtcactttgcaattttaacttaacaattgtgcatagagctggggcaaaatggaccggtcctgtaaggtcggcctgggctgagtttgaatcagaaaa
|||||| ||||| ||||| ||||| ||||| || ||||| || |||||||| ||||| |||||  ||| ||||||  | || |||||||| |||||||||||||||     | ||||||   |||     |||||       ||  || |||    | |    || |        | | || |   | |   |  |||  
GAGTGTAGAGTTTATGCCATTCTTTTTGTCACTCTTTGTCTTCCTCTGTGGTACTTCGTGGTTCGTCTATGGTCTAATCGGTCGTGACCCTTTTGTTGCAgtaagt-----tacaatttctccttc----ttgtgttgttttctttggtaaat---atcaaaactttgtttctaactttgggtttttgttgttgcgaag-

upper sequence: GLYMA06G12740.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0001g15330.t01 (Vitis vinifera), 5'ss of exon 5
GAGTGTGGAGTTCATGCCCTTCTTCTTGTCGCTGTTTGTGTTTCTCTGTGGCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCAgtaagtcactttgcaattttaacttaacaattgtgcatagagctggggcaaaatggaccggtcctgtaaggtcggcctgggctgagtttgaatcagaaaa
|||||| |||| ||||||||||||||| || ||||| ||||| ||||| || |||||||||||| ||||||| || || ||    ||||| ||||| || ||||| | ||| |   || |      |   |||   ||   |  |||    |    |   ||  | |||  ||   | || |    | ||   | | |  
GAGTGTAGAGTACATGCCCTTCTTCTTATCACTGTTCGTGTTCCTCTGCGGTACTTCCTGGTTTGTCTTTGGCCTACTCGGTAAAGACCCCTTTGTCGCGgtaag-cgcttggtccttgt----cgaggtttgcctatgtggtggggaattacccaatttgtagtttaa--tcaagcgggacattatatggtgctgcag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209700763|gb|BW683046.1|BW683046
EST:     GCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCA                         GTACCTAATGGTGTTGGTTCTGCTTTGGGGACAATGCAACTAATATTGTAT
genomic: GCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCAgtaagtcact ... ggattttcagGTACCTAATGGTGTTGGTTCTGCTTTGGGGACAATGCAACTAATATTGTAT
EST: gi|10253026|gb|BE820792.1|BE820792
EST:     GCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCA                         GTACCTAATGGTGTTGGTTCTGCTTTGGGGACAATGCAACTAATATTGTAT
genomic: GCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCAgtaagtcact ... ggattttcagGTACCTAATGGTGTTGGTTCTGCTTTGGGGACAATGCAACTAATATTGTAT
EST: gi|6964073|gb|AW432766.1|AW432766
EST:     GCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCA                         GTACCTAATGGTGTTGGTTCTGCTTTGGGGACAATGCAACTAATATTGTAT
genomic: GCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCAgtaagtcact ... ggattttcagGTACCTAATGGTGTTGGTTCTGCTTTGGGGACAATGCAACTAATATTGTAT