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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCCCACAGGAGATGAAGCATACAGTGAAAATGGTTTAGTGCCTCGGACAATACGTTTGCTCAAGGATAAGTACCCAGACCTTgtaagtgaacatgatttccatagttgaggatattatattttctggtgcatatagaaagttaagccaataacctttctcattcaatctttcttcag

Basic information

species Glycine max
transcript GLYMA06G12110.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G12110.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os06g49110.2 (Oryza sativa), 5'ss of exon 5
TCTCCCACAGGAGATGAAGCATACAGTGAAAATGGTTTAGTGCCTCGGACAATACGTTTGCTCAAGGATAAGTACCCAGACCTTgtaagtgaacatgatttccatag---ttgaggatatta---tattttctggtgcatatagaaagttaagccaataacctttctcattcaatctttc-ttcag
||||   | |||||||| ||||||| ||| |||||||| || || ||||| || ||  ||||||||||||| | ||| ||| |||||||| ||||||     ||| |   ||||   ||| |   ||| || |||    ||    || |     ||       | || ||   || | |  || ||
TCTCAATCTGGAGATGAGGCATACAATGATAATGGTTTGGTTCCACGGACTATTCGCCTGCTCAAGGATAAATTCCCTGACATTgtaagt-aacatgtccctcattgaatttgaatgtataagtctatattgtggcctttactttaattgctatcatctttgctgctaataatatgtctgatttag

upper sequence: GLYMA06G12110.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0001g02550.t01 (Vitis vinifera), 5'ss of exon 5
TCTCCCACAGGAGATGAAGCATACAGTGAAAATGGTTTAGTGCCTCGGACAATACGTTTGCTCAAGGATAAGTACCCAGACCTTgtaagtgaacat------------gatttccatagttgaggatattatattttc-----------tggtgcatatagaaagttaagccaataacctttctcattcaatctttcttcag----
|||||||||||||||||||||| || ||| |||||||||||||| |||||||| || |||||||| || |  ||||| || |||||||||  |  |            | ||||  || ||   | |  ||    ||            || |  ||  |   |  |  | || |  | ||  |  || ||||| ||||       
TCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACAATTCGATTGCTCAAAGACAGATACCCTGATCTTgtaagttgaagtacttcatttggtggtttctctatttttaggtcataggcctttccaggttaggatgctttatgcatggaagtctggcattctctttgatgctttaatctgtctttcattag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6481889|gb|AW201160.1|AW201160
EST:     GTTTAGTGCCTCGAACAATACGTTTGCTCAAGGATAAGTACCCAGACCTT                         GTTATCTATACAGATGTTGCATTAGATCCTTATTCATCAGATGGGCATGAT
genomic: GTTTAGTGCCTCGGACAATACGTTTGCTCAAGGATAAGTACCCAGACCTTgtaagtgaac ... ctttcttcagGTTATCTATACAGATGTTGCATTAGATCCTTATTCGTCAGATGGGCATGAT