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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTTCTTTCCACAACTACAGAATCTGGTCATTCTTGGGCCTCGTGATGACCACTTACACTGCATGGTATATGACCATAGCTTCCCTTACCCATGGCCAGgtaaaaagactcgatatttaggagcctcaacatcagcataaaattaaagcaaatcaaataacaatgattgctaacacatgtgatataataagtattattgttgctaattatttgtgttcttcaattaatattctgtgtgtttctctaaag

Basic information

species Glycine max
transcript GLYMA06G11540.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G11540.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g14080.1 (Oryza sativa), 5'ss of exon 4
CCCTTCTTTCCACAACTACAGAATCTGGTCATTCTTGGGCCTCGTGATGACCACTTACACTGCATGGTATATGACCATAGCTTCCCTTACCCATGGCCAGgtaaaaagactcgatatttaggagcctcaacat-cagcataaaattaaagcaaatc-aaataacaa--tgattgctaacacatgtgatataataagtattattgttgctaattatttgtgttcttca-attaatattctgtgtgtttctctaaag
||| || |||||||||||| | |||||||||||| | |||||||| |||||||| ||||| || |||||  |  || | || ||||| | |||||||||||||  |  || | | |          | | ||| ||||||      |   |   ||  |||| | |   |  |||    |||| |  || | |  ||  |  ||     ||  | ||||||| ||   || |||||                   
CCCGTCGTTCCACAACTACCGGATCTGGTCATTCCTCGGCCTCGTCATGACCACCTACACGGCCTGGTACCTCGCCGTCGCCTCCCTCATCCATGGCCAGgtagtacaacacaaaagcaccatctgttagcatgcagcatgcttgcatttctcgtctgaatagcgaggcgcatgcctgaacat-tattacattgcgttgtgctgaaa--aaacacttgtgttttttgtatgaatatcag----------------

upper sequence: GLYMA06G11540.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G149481_T02 (Zea mays), 5'ss of exon 4
CCCTTCTTTCCACAACTACAGAATCTGGTCATTCTTGGGCCTCGTGATGACCACTTACACTGCATGGTATATGACCATAGCTTCCCTTACCCATGGCCAGgtaaaaagactcgatatttaggagcctcaacatcagcataaaattaaagcaaatcaaataacaatgattgctaacacatgtgatataataagtattattgttgctaattatttgtgttcttcaattaatattctgtgtgtttctctaaag
||| || |||||||||||| | |||||||| ||| |||||||||| |||||||| ||||| || |||||  |  || | || ||||| | |||||||||||||   |  |      || | |      |         |     |   ||   |    |     |||  |    |  |   ||| |      |  |  || | ||| || ||   |                                  
CCCGTCGTTCCACAACTACCGGATCTGGTCGTTCCTGGGCCTCGTCATGACCACCTACACGGCGTGGTACCTCGCCGTCGCGTCCCTCATCCATGGCCAGgtacgcaagcgtagcgttgaagcataatatgcattctgtgggcctgtggcctgtggcctgtgggtgaccg---gccgagacgatgtgtgtgcttctgctgct-ctacttgttgcag----------------------------------

upper sequence: GLYMA06G11540.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G045057_T02 (Zea mays), 5'ss of exon 4
CCCTTCTTTCCACAACTACAGAATCTGGTCATTCTTGGGCCTCGTGATGACCACTTACACTGCATGGTATATGACCATAGCTTCCCTTACCCATGGCCAGgtaaaaagactcgatatttaggagcctcaacatcagcataaaattaaagcaaatcaaataacaatgattgctaacacatgtgat-ataataagtattattgttgctaattatttgtgttcttcaattaatattctgtgtgtttctctaaag
||| || |||||||||||| | |||||||| ||| | |||||| | |||||||| ||||| ||||||||  | ||||| ||  || |  | || || |||||| | |  | |      |  ||       ||  ||   |    |        |    ||         | |     || ||    ||  ||  ||||   ||| |         | || |                              
CCCCTCCTTCCACAACTACCGGATCTGGTCCTTCCTCGGCCTCCTCATGACCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgcgctgagcgtgtgatatgatgcactagtcgattgatcgcctgcttgcgctatgtccagcagatcgtgtatatggccgtaccaaacatta--attgatggacgacaatattatag----------------------------

upper sequence: GLYMA06G11540.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G77690.1 (Arabidopsis thaliana), 5'ss of exon 4
CCCTTCTTTCCACAACTACAGAATCTGGTCATTCTTGGGCCTCGTGATGACCACTTACACTGCATGGTATATGACCATAGCTTCCCTTACCCATGGCCAGgtaaaaagactcgatatttaggagcctcaacatcagcataaaattaaagcaaatcaaataacaatgattgctaacacatgtgatataataagtattattgttgctaattatttgtgttcttcaattaatattctgtgtgtttctctaaag
 ||||| |||||||| || ||||| ||||||||| | || ||||  ||||||||||||||| | |||||| | ||||| ||||| ||    ||||||||||| |  | | |  | |   |      |    || |  |||| ||  |  || ||  | |     | |||| |      | | ||||| | | | ||  | |    ||                                           
TCCTTCCTTCCACAATTATAGAATTTGGTCATTCCTCGGACTCGCTATGACCACTTACACTTCTTGGTATCTCACCATTGCTTCACTCCTTCATGGCCAGgtcattataattaacaca-aatcttgttttgattattataagatatagacatat--agtcctggttattgttg-----tttaatatatttatttttcatataaaaaag------------------------------------------

upper sequence: GLYMA06G11540.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0001g03540.t01 (Vitis vinifera), 5'ss of exon 4
CCCTTCTTTCCACAACTACAGAATCTGGTCATTCTTGGGCCTCGTGATGACCACTTACACTGCATGGTATATGACCATAGCTTCCCTTACCCATGGCCAGgtaaaaagactcgatatttaggagc-ctcaaca-tcagcataaaattaaagcaaatcaaataacaatgattgctaacacatgtgatataataagtattattgttgctaattatttgtgttcttcaattaatattctgtgtgtttctctaaag
 ||||| ||||| || |||||||| ||||||||||| |||||  |||||||||| |||||| | |||||| | ||||| |||||| ||| |||||| ||||||   |    |  || ||||  |   ||| || | ||  | || || ||  || ||  ||||         |     | | ||||| | | |   ||||  ||  ||| || |    | ||  | ||  |  | ||               
TCCTTCATTCCATAATTACAGAATTTGGTCATTCTTAGGCCTTATGATGACCACCTACACTTCTTGGTATCTAACCATTGCTTCCTTTATCCATGGGCAGgtatgtatttaccttaattagctgtattcatcacttagttttaatttcaaataattcccataatcccatcccc-----cctttgatacattgat--ttat--ttattaagtaatcccatgctg-atttgcttgtttgaag------------