Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTTTGCCCAATTCTGTGTTGGTGTTTGAGGGAAGGTCCGCTTTGGTACCTACTGTGCAGCATATACCCACAGgtactgaggtatgttttattttcttgcccaagtcgaaataataatttgccatatttagttcaatggtttatagagcaagaaacgtcatttggtgatcatt...

Basic information

species Glycine max
transcript GLYMA06G11490.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G11490.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0001g03730.t01 (Vitis vinifera), 5'ss of exon 7
CTGTTTGCCCAATTCTGTGTTGGTGTTTGAGGGAAGGTCCGCTTTGGTACCTACTGTGCAGCATATACCCACAGgtactgaggta-----tgttttattttcttgcc--caagtcgaaataataat-ttgccatatttagttcaatg-gtttatagagcaagaaacgtcat-ttggtgatcatt
||| |||||||| ||||| ||||| ||||||| |||||  ||  |||| | | ||||||| ||||| |||| |||||||||||||     ||||||  |||  ||              |||| || |   || || ||     ||   |  ||    | |       ||  |    | |||  
CTGCTTGCCCAACTCTGTTTTGGTATTTGAGGAAAGGTTAGCAGTGGTCCGTGCTGTGCAACATATTCCCAAAGGTACTGAGgtaatatatgtttttcttttctgttgttggtctttcttaattatatcaacaaatataacaagattcatccatgaccctaagggtaacaagtctaagctca--