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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGTCATGACATATTTGCTCCGCCACCAGAAATCAAACCCAGGCCAATAACTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcaccactattagttgctaacctgaattatttggtgaatacttttcatattttgatctcccacctgtaaatttagaatttggatgcttcaataaca...

Basic information

species Glycine max
transcript GLYMA06G10930.3
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193323959|gb|FK291707.1|FK291707
EST:     CTCCTCGCATACTGGAGTTGAAGGGAAGCATAGACATTGGAGAACGTCAT                         GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
genomic: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: gi|209714512|gb|BW684875.1|BW684875
EST:     CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCAT                         GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
genomic: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: gi|193386200|gb|FK351660.1|FK351660
EST:     GAAGCATAGACATTGGAGAACGTCAT                         GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
genomic: GAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: gi|208298269|gb|GE095458.1|GE095458
EST:     CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCAT                         GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
genomic: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: gi|209723463|gb|BW669462.1|BW669462
EST:     CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCAT                         GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAG-CAGCAAAGAAG
genomic: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: gi|193708306|gb|FK643214.1|FK643214
EST:     GTTGAAAGGAAGCATAGACATTGGAGAACGTCAT                         GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
genomic: GTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: gi|214009384|gb|DB988609.1|DB988609
EST:     AGTTGAAAGGAAGCATAGACATTGGAGAACGTCAT                         GCTGATGGAGATCAAGGCGATACCAGCTCCGCTGGGAAGACAGCAAAGAAG
genomic: AGTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: gi|193660441|gb|FK604793.1|FK604793
EST:     TAGACATTGGAGAACGTCAT                         GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
genomic: TAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: gi|214008443|gb|DB990009.1|DB990009
EST:     CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCAT                         GCTGATGGAGATCAAGGCGATACCAACACAGCTGGGAAG-CAGCAAAGAAG
genomic: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: gi|193309488|gb|FK277108.1|FK277108
EST:     GAAGCATAGACATTGGAGAACGTCAT                         GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
genomic: GAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: gi|207844790|gb|GD813589.1|GD813589
EST:     CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCAT                         GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCGAAGAAG
genomic: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: gi|208125995|gb|GD922089.1|GD922089
EST:     CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCAT                         GCTGATGGAGATCAGGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
genomic: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: gi|15287454|gb|BI471345.1|BI471345
EST:     CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCAT                         GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
genomic: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: gi|208199093|gb|GD995036.1|GD995036
EST:     CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCAT                         GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCGAAGAAG
genomic: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: gi|193385953|gb|FK351581.1|FK351581
EST:     GTTGAAAGGAAGCATAGACATTGGAGAACGTCAT                         GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
genomic: GTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: gi|193339100|gb|FK303985.1|FK303985
EST:     GAGAACGTCAT                         GTCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAA
genomic: GAGAACGTCATgtatgcacca ... tggtttacagG-CTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAA
EST: gi|192314071|gb|FK010351.1|FK010351
EST:     CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCAT                         GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
genomic: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: gi|208209593|gb|GE001862.1|GE001862
EST:     CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCAT                         GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
genomic: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: gi|208062023|gb|GD856811.1|GD856811
EST:     CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCAT                         GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCGAAGAAG
genomic: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: gi|51336048|gb|CO979914.1|CO979914
EST:     CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCAT                         GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
genomic: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
EST: gi|208121956|gb|GD918951.1|GD918951
EST:     CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCAT                         GCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG
genomic: CTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcacca ... tggtttacagGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGGTCATGACATATTTGCTCCGCCACCAGAAATCAAACCCAGGCCAATAACTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATgtatgcaccactattagttgctaacctgaattatttggtgaatacttttcatattttgatctcccacctgtaaatttagaatttggatgcttcaataaca

- - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA