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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAAAGATGAGAGGGGCACCTGGCTTCAACATCTCACATATGGAGTTTTTGGCCTGGGTAACAGACAATACGAACACTTTAATAAGgtaatatcagatgattttgtttttatttaacaataaaaaatcatcatttgattctgatgctgttcttttgatgcag

Basic information

species Glycine max
transcript GLYMA06G10180.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G10180.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0001g07630.t01 (Vitis vinifera), 5'ss of exon 5
GGGAAAGATGAGAGGGGCACCTGGCTTCAACATCTCACATATGGAGTTTTTGGCCTGGGTAACAGACAATACGAACACTTTAATAAGgtaatatcagatgattttgtttttatttaacaataaaaaatcatcatttgattctgatgctgttcttttgatgcag
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---GGAAAAGAGAGGGAGGCCTGGCTTCAACAACTCACATATGGTGTTTTTGGTCTGGGTAACCGCCAATATGAACATTTTAACAAGgtacgatt-ggtgagat-atttaagtttatccattatatatc-tcata-gtatctgatggaacctttttgaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254324305|gb|GR840622.1|GR840622
EST:     CATATGGAGTTTTTGGCCTGGGTAACAGACAATACGAACACTTTAATAAG                         ATAGGTAAAGTTGTTGATGAAGATCTTAGTGAACAAG
genomic: CATATGGAGTTTTTGGCCTGGGTAACAGACAATACGAACACTTTAATAAGgtaatatcag ... tttgatgcagATAGGTAAAGTTGTTGATGAAGATCTTAGTGAACAAG