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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTGCAGAACTTGTTTTTGCTCCAATTGACGCATCTTTCTCTGATGATGCACCCATTTTACCTTCTGGTTTTCGCATCATACCTCTAGATTCTGGCACAgtaagtctattagctagcatatagtttgattgtattgtttttgaaattggttgtttgagtaaggatttgattttctgttttctgttattttggtggtctcatattgatgtgatatgatgcag

Basic information

species Glycine max
transcript GLYMA06G09100.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G09100.2 (Glycine max), 5'ss of exon 5
lower sequence: AT4G32880.1 (Arabidopsis thaliana), 5'ss of exon 15
CAGTGCAGAACTTGTTTTTGCTCCAATTGACGCATCTTTCTCTGATGATGCACCCATTTTACCTTCTGGTTTTCGCATCATACCTCTAGATTCTGGCACAgtaagtcta--ttagctagcatatagtttgattgtattgtttttgaaattggttgtttgagtaaggatttgattttctgttttctgttattttggtggtctcatattgatgtgatatgatgcag
  | ||||| ||| | ||||| ||||| |||||||||||||||||||||||||| ||  | ||||| ||||| |||||||| |||||||||||     ||||| ||  |  | |  || ||   |   | |||  | | |  ||||| |    |  |    ||   ||   ||| | | |                                            
ATGCGCAGAGCTTATATTTGCACCAATCGACGCATCTTTCTCTGATGATGCACCAATCATTCCTTCCGGTTTCCGCATCATTCCTCTAGATTCCAAATCAgtacgttcaattcatataacaatcaaaatcatta-actttagttgaa-tcaaatactaatttataaatcgaattatgtatag------------------------------------------

upper sequence: GLYMA06G09100.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0008g03250.t01 (Vitis vinifera), 5'ss of exon 14
CAGTGCAGAACTTGTTTTTGCTCCAATTGACGCATCTTTCTCTGATGATGCACCCATTTTACCTTCTGGTTTTCGCATCATACCTCTAGATTCTGGCACAgtaagtctattagctagcatatagtttgattgtattgtttttgaaattggttgtttgagtaaggatttgattttctgttttctgttattttggtggtctcatattgatgtgatatgatgcag
| || | |||||  | |||||||||||||| || ||||||||||||||||||||  || | |||||||||||||| || || || || ||||||||    |||||| | |        || | || |   |||||  | |    |  |   ||||| | || |   |||  | |   || | |  |  |    || |                         
CTGTTCTGAACTCATCTTTGCTCCAATTGATGCCTCTTTCTCTGATGATGCACCTCTTCTTCCTTCTGGTTTTCGAATTATTCCCCTTGATTCTGGGGTGgtaagtattt--------attttgtct---tgtataatctacacatgtatgtgttttattaggttcttgcctcttcattctgtactgctaca-tgatgcag---------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22541805|gb|BU091648.1|BU091648
EST:     CACCCATTTTACCTTCTGGTTTTCGCATCATACCTCTAGATTCTGGCACA                         GATGCTGCTAGTCCAAACCGTACACTTGATTTGGCTTCTGCACTTGAGGTT
genomic: CACCCATTTTACCTTCTGGTTTTCGCATCATACCTCTAGATTCTGGCACAgtaagtctat ... tatgatgcagGATGCTGCTAGTCCAAACCGTACACTTGATTTGGCTTCTGCACTTGAGGTT
EST: gi|151395024|gb|EV264895.1|EV264895
EST:     CACCCATTTTACCTTCTGGTTTTCGCATCATACCTCTAGATTCTGGCACA                         GATGCTGCTAGTCCAAACCGTACACTTGATTTGGCTTCTGCACTTGAGGTT
genomic: CACCCATTTTACCTTCTGGTTTTCGCATCATACCTCTAGATTCTGGCACAgtaagtctat ... tatgatgcagGATGCTGCTAGTCCAAACCGTACACTTGATTTGGCTTCTGCACTTGAGGTT
EST: gi|15286780|gb|BI470671.1|BI470671
EST:     CACCCATTTTACCTTCTGGTTTTCGCATCATACCTCTANATTCTGGCACA                         GATGCTGCTAGTCCAAACCGTACACTTGATTTGGCTTCTGCACTTGAGGTT
genomic: CACCCATTTTACCTTCTGGTTTTCGCATCATACCTCTAGATTCTGGCACAgtaagtctat ... tatgatgcagGATGCTGCTAGTCCAAACCGTACACTTGATTTGGCTTCTGCACTTGAGGTT
EST: gi|9819663|gb|BE555176.1|BE555176
EST:     CACCCATTTTACCTTCTGGTTTTCGCATCATACCTCTAGATTCTGGCACA                         GATGCTGCTAGTCCAAACCGTACACTTGATTTGGCTTCTGCACTTGAGGTT
genomic: CACCCATTTTACCTTCTGGTTTTCGCATCATACCTCTAGATTCTGGCACAgtaagtctat ... tatgatgcagGATGCTGCTAGTCCAAACCGTACACTTGATTTGGCTTCTGCACTTGAGGTT
EST: gi|208045064|gb|GD843756.1|GD843756
EST:     CACCCATTTTACCTTCTGGTTTTCGCATCATACCTCTAGATTCTGGCACA                         GATGCTGCTAGTCCAAACCGTACACTTGATTTGGCTTCTGCACTTGAGGTT
genomic: CACCCATTTTACCTTCTGGTTTTCGCATCATACCTCTAGATTCTGGCACAgtaagtctat ... tatgatgcagGATGCTGCTAGTCCAAACCGTACACTTGATTTGGCTTCTGCACTTGAGGTT
EST: gi|4396314|gb|AI495311.1|AI495311
EST:     CACCCATTTTACCTTCTGGTTTTCGCATCATACCTCTAGATTCTGGCACA                         GATGCTGCTAGTCCAAACCGTACACTTGATTTGGCTTCTGCACTTGAGGTT
genomic: CACCCATTTTACCTTCTGGTTTTCGCATCATACCTCTAGATTCTGGCACAgtaagtctat ... tatgatgcagGATGCTGCTAGTCCAAACCGTACACTTGATTTGGCTTCTGCACTTGAGGTT