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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCACGGTTGCCCTGGAGTGGCTGCACGTGCTTGCGGCCTTGTGGGTCTAGAACCTACCAGGgtaagttccttcctctttgatattaatttagaggactaatcccattgtgaagtaagtggggatgcatatattggttgaatatgaaaatgtaaaatgttgggtgcag

Basic information

species Glycine max
transcript GLYMA06G09100.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G09100.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G32880.1 (Arabidopsis thaliana), 5'ss of exon 6
CCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCACGGTTGCCCTGGAGTGGCTGCACGTGCTTGCGGCCTTGTGGGTCTAGAACCTACCAGGgtaagttccttcctctttgatattaatttagaggactaatcccattgtgaagtaagtggggatgcatatattggttgaatatgaaaatgtaaaatgttgggtgcag
||||||||||||||||| |||||||||||||||||||| || ||| | ||| | ||||| ||||||||||||||||||||||| || || || ||||||||| |  | |||  |    |   | ||   |    ||||  |  |  |  ||    | |   | ||     ||   | |     | |     |          
CCTGGTCCGGATTCCATAGGAATCGTTGCTATTTCTCATGGATGCACGGGAATCGCTGCTCGTGCTTGCGGCCTTGTGGGTCTTGATCCCACAAGGgtaagtactattctcact----tctttctaataggtacatcc--tcatagatcaaccaagaacataaatcacatttctgttttgtttttttcgcag----------

upper sequence: GLYMA06G09100.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0008g03250.t01 (Vitis vinifera), 5'ss of exon 5
CCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCACGGTTGCCCTGGAGTGGCTGCACGTGCTTGCGGCCTTGTGGGTCTAGAACCTACCAGGgtaagttccttcctc-tttgatattaatttagaggactaatcccattgtgaagtaagtggggatgcatatattggttgaatatgaaaatgtaaaatgttgggtgcag
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||| || |||||||||||  ||||||| || || || ||||||   |||  |  ||| ||| ||      | |    |  | | ||| ||   |  ||  |   | | |   |  |                            
CCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGAGTGGCAGCACGCGCATGCGGCCTTGTCAGTCTAGAGCCAACAAGAgtaagtattttcaacacttggtatcaa------gcatatttttcttggtggagattggaggactaagtgtttccatccag---------------------------