Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTGCTATTCAAGACAACAGGGTTACCACTGTTCAATGCTTGTCTGGAACTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgctttgtccttgacttttttgtcctcctttttaaccgatgttaatttaatgatcccaccttaacattttttactgcacttgtcaattcag

Basic information

species Glycine max
transcript GLYMA06G08670.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G08670.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g55540.1 (Oryza sativa), 5'ss of exon 5
CCCTGCTATTCAAGACAACAGGGTTACCACTGTTCAATGCTTGTCTGGAACTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgctttgtccttgacttttttgtcctcctttttaaccgatgttaatttaatgatcccaccttaa-cattttttactgcacttgtcaattcag
 ||||| |||||||| || |||||  | || ||||| |||||||| ||||||||||||||||| || || ||||||||| | || |  || |||||  |||||| |    |   ||||| ||  ||  |      |  ||   | |  ||  |||     |  |   | | |  |   |  |  || |||   | |||
TCCTGCCATTCAAGAGAATAGGGTGGCTACAGTTCAGTGCTTGTCAGGAACTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatctg--ccttggctccttcatagatactgata--tggttctacattacaatgcaaagtatgatcgctaaattataaacgtgttc-tccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213618075|gb|DB963708.1|DB963708
EST:     CTGGTTCTTTAAGAGTTAGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAAC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAAC
EST: gi|5606173|gb|AI900271.1|AI900271
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|27808994|gb|CB063416.1|CB063416
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|17022063|gb|BM093097.1|BM093097
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|37997401|gb|CF808990.1|CF808990
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|151408997|gb|EV278805.1|EV278805
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|213587077|gb|DB961772.1|DB961772
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|151394218|gb|EV264089.1|EV264089
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|6454608|gb|AW185291.1|AW185291
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCCGA-GGTTTT
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCC-GAAGGTTTT
EST: gi|9986765|gb|BE660873.1|BE660873
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|151395018|gb|EV264889.1|EV264889
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|213588877|gb|DB967957.1|DB967957
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|16996361|gb|BM085733.1|BM085733
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|254323227|gb|GR840032.1|GR840032
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|24135997|gb|BU926507.1|BU926507
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|193718709|gb|FK649515.1|FK649515
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCA
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCA
EST: gi|7686676|gb|AW757333.1|AW757333
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|298196933|gb|HO041676.1|HO041676
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATC
EST: gi|209723439|gb|BW682393.1|BW682393
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTT
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTT
EST: gi|24205360|gb|BU964613.1|BU964613
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACCTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|298196196|gb|HO044587.1|HO044587
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|7925748|gb|AW831774.1|AW831774
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CCGACTATATACTTGCCCACACCCAACTTGGG-CAATCACCCCAAGGGTTT
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACC-AACTTGGGGCAATCACCCGAAGGTTTT
EST: gi|298174108|gb|HO017444.1|HO017444
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCCACACCAACTTGGGG
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGG
EST: gi|209719273|gb|BW679815.1|BW679815
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|151411675|gb|EV281486.1|EV281486
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTT-GGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|209714938|gb|BW650784.1|BW650784
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|18690845|gb|BM519693.1|BM519693
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC