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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGAGTGTTTCAAGGATAGAACTGATGTACAATGCTTGCATAGGTGGCAGAAAGTCTTAAATCCAGAACTTGTCAAAGGTCCATGGTCTAAAGAGgtaatctctactttccatttcttgcccgtgctgatcttatctctacatgttagtatttattttgatgtaatattagaatgtataatttttctgtttacacatctaatgtgaagtcatctatcgaatctgaatgcaaacag

Basic information

species Glycine max
transcript GLYMA06G08660.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G08660.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g12860.1 (Oryza sativa), 5'ss of exon 4
CTGAGTGTTTCAAGGATAGAACTGATGTACAATGCTTGCATAGGTGGCAGAAAGTCTTAAATCCAGAACTTGTCAAAGGTCCATGGTCTAAAGAGgtaatctctactttccatttcttgcccgtgctgatcttatctctacatgttagtatttattttgatgtaatattagaatgtataatttttctgtttacacatctaatgtgaagtcatctatcgaatctgaatgcaaacag
| || || ||   ||||||||| ||||||||||||||||| |||||||| || ||  |||| || ||| | |||||||| |||||||| ||||| |||| |      ||  |||| ||  |    || |  | ||  ||  || |   || | || ||    | | | | | |||     |||||| |                                               
CGGAATGCTTTCCGGATAGAACCGATGTACAATGCTTGCACAGGTGGCAAAAGGTTCTAAACCCTGAATTAGTCAAAGGGCCATGGTCCAAAGAAgtaagcatgctatttgatttattttcatctcttaaataata-ctgtat-tggttactcatcttacgctcacaatggcatgctccttttttcag-----------------------------------------------

upper sequence: GLYMA06G08660.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os12g13570.1 (Oryza sativa), 5'ss of exon 4
CTGAGTGTTTCAAGGATAGAACTGATGTACAATGCTTGCATAGGTGGCAGAAAGTCTTAAATCCAGAACTTGTCAAAGGTCCATGGTCTAAAGAGgtaatctctactttccatttcttgcccgtgctgatcttatctctacatgttagtatttattttgatgtaatattagaatgtataatttttctgtttacacatctaatgtgaagtcatctatcgaatctgaatgcaaacag
| || |||||   ||||||||| ||||||||||||||||| |||||||| || ||  |||| || ||| | |||||||| |||||||| ||||| |||   |     |||||||| ||  |  | || |  |  | |  |   || |  ||    |        | | |    |||    |||||| |                                               
CGGAATGTTTTCCGGATAGAACCGATGTACAATGCTTGCACAGGTGGCAAAAGGTTCTAAACCCTGAATTGGTCAAAGGGCCATGGTCCAAAGAAgtaggatgc-tattccatttattttcatttcttagatagtattgattagtcataatacgctc-------acaatgacttgttccctttttcag-----------------------------------------------

upper sequence: GLYMA06G08660.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv11s0016g03750.t01 (Vitis vinifera), 5'ss of exon 4
CTGAGTGTTTCAAGGATAGAACTGATGTACAATGCTTGCATAGGTGGCAGAAAGTCTTAAATCCAGAACTTGTCAAAGGTCCATGGTCTAAAGAGgtaatctctactttccatttcttgcccgtgctgatcttatctctaca-tgttagtatttattttg-atgtaatat-tagaatgtataatttttctgtttacacatctaatgtgaagtcatctatcgaatctgaa--tgcaaacag
|||| |||||||||||| | || ||||| || || ||||| ||||||||||||||||||||||| |||||  ||||||||||||||||||||||||| |  ||   | | |||       |  |   |||    |  ||| | |   | |||||  |  | |  |||||| | | |  ||   |  |  ||||||   ||  ||||     | | |  | || ||| |   |  ||||||
CTGAATGTTTCAAGGATCGGACCGATGTTCAGTGTTTGCACAGGTGGCAGAAAGTCTTAAATCCTGAACTCATCAAAGGTCCATGGTCTAAAGAGgtgaattcatttgtacatcagactgctttatagattccttgcctaaagtaccattatttcatgggcaattaatatcttgtaactaagttgctggtgtttattgatacaatg--gtataaccagttgattctaatattataaacag