Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAACGATGACGTTATAGTCTGGCATTTTCCATATTTCCGTTgtatgtgacaccctgcctccttattttgttttttcttaatgttaatattcttgctatgaacttgtggtgtatctagcctttggctattattaccactgat...

Basic information

species Glycine max
transcript GLYMA06G08620.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G08620.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0009g03520.t01 (Vitis vinifera), 5'ss of exon 5
GGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAACGATGACGTTATAGTCTGGCATTTTCCATATTTCCGTTgtatgtgacaccctgcctcctt-attttgttttttcttaatgttaatattcttgctatgaacttgtggtgt-atctagcctttggctattattaccactgat
|||||||||  ||||    |||| ||||| | |||||||||||||||| ||||||  |||  ||||||||||||||||||| || ||||||     |     |||||| | |||     | |||| ||| |||  | || |||| || |         || |    |||   ||   ||  || ||  
GGCAACATTGCTACCTGCAATTAGACGTTATTTGCCAAAGCATTGGAATGATGACCCTATCATCTGGCATTTTCCATATTTTCGCTgtatgatgtgcttattctcctttagtttccaagtgcttattgtgaattcttttcctattaattcaaaaccccatttctttttttattaaagttgtcagtg--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6072670|gb|AW102057.1|AW102057
EST:     AAAGCATTGGAACGATGACGTTATAGTCTGGCATTTTCCATATTTCCGTT                         CTTTGGAGATTGAGTTTACAAAGTCACAGGTCGTTGCTGGAATCCCTGCGA
genomic: AAAGCATTGGAACGATGACGTTATAGTCTGGCATTTTCCATATTTCCGTTgtatgtgaca ... tcttacacagCTTTGGAGATTGAGTTTACAAAGTCACAGGTCGTTGCTGGAATCCCTGGGA
EST: gi|213600256|gb|DB964336.1|DB964336
EST:     AAAGCATTGGAACGATGACGTTATAGTCTGGCATTTTCCATATTTCCGTT                         CTTTGGAGATTGAGTT
genomic: AAAGCATTGGAACGATGACGTTATAGTCTGGCATTTTCCATATTTCCGTTgtatgtgaca ... tcttacacagCTTTGGAGATTGAGTT
EST: gi|193440389|gb|FK410484.1|FK410484
EST:     AAAGCATTGGAACGATGACGTTATAGTCTGGCATTTTCCATATTTCCGTT                         CTTTGGAGATTGAGTTTACAAAGTCACTGGTCGTTGCTGGAATCCCTGGGA
genomic: AAAGCATTGGAACGATGACGTTATAGTCTGGCATTTTCCATATTTCCGTTgtatgtgaca ... tcttacacagCTTTGGAGATTGAGTTTACAAAGTCACAGGTCGTTGCTGGAATCCCTGGGA