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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGATGGAGGATGGATTGCACGAATTGCAGCTTTACTTGTGGGCGAAGACCCAACACAGTCATATGCGCTCATATGCGGTAACTGCTATATGCATAATGgtaagggggctagatttgatcttttatgatcatgtccttttgcatttattgcagaataaagatgattgtacaagtgctattttgtttttttacaatagaccatgttaatagatgaatacaacagtaaaaaaatgtgtattcttatctgcttattttctttcag

Basic information

species Glycine max
transcript GLYMA06G07930.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G07930.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G153332_T01 (Zea mays), 5'ss of exon 4
CAAGATGGAGGATGGATTGCACGAATTGCAGCTTTACTTGTGGGCGAAGACCCAACACAGTCATATGCGCTCATATGCGGTAACTGCTATATGCATAATGgtaagggggctagatttgatcttttatgatcatgtccttttgcatttattgcagaataaag-atgattgtacaagtgctattttgtttttttacaatagaccatgttaatagatgaatacaacagtaaaaaaatgtgtattcttatctgcttattttctttcag
 | | ||| ||||||||||||   ||||| || ||||||||||  || |||||| |||||||||||||  | ||||| || |||||| ||||||||||||||  |     ||||        ||| ||||  | | |   | |  | ||| |  ||   || || | |  | |  |||                                                                                      
GATGGTGGTGGATGGATTGCAAAGATTGCTGCCTTACTTGTGGCAGAGGACCCATCACAGTCATATGCTTTGATATGTGGCAACTGCCATATGCATAATGgtgtgtattatagacaaagcacttt-tgatatttttcacataccataattacctaacccagtattacta-atatttgcag------------------------------------------------------------------------------------

upper sequence: GLYMA06G07930.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G074436_T01 (Zea mays), 5'ss of exon 4
CAAGATGGAGGATGGATTGCACGAATTGCAGCTTTACTTGTGGGCGAAGACCCAACACAGTCATATGCGCTCATATGCGGTAACTGCTATATGCATAATGgtaagggggctagatttgatcttttatgatcatgtccttttgcatttattgcagaataaagatgattgtacaag-tgctattttgtttttttacaatagaccatgttaatagatgaatacaacagtaaaaaaatgtgtattcttatctgcttattttctttcag
 | | ||| ||||||||||||   ||||| || ||||||||||| || |||||| ||||||| |||||  | ||||| || | |||| |||||||||| |||  |     |||||   | || || ||||       |||| ||  ||    |    ||    |  || |  |  |  |||     |||||  ||                                                                     
GATGGTGGTGGATGGATTGCAAAGATTGCTGCCTTACTTGTGGGGGAGGACCCATCACAGTCGTATGCTTTGATATGTGGCAGCTGCCATATGCATAACGgtgtgtattatagatc-aagctcttttgata------tttttcacataccatacctaaatatcggatgcattacctaatataccaattttt-gcag--------------------------------------------------------------------

upper sequence: GLYMA06G07930.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G31080.1 (Arabidopsis thaliana), 5'ss of exon 5
CAAGATGGAGGATGGATTGCACGAATTGCAGCTTTACTTGTGGGCGAAGACCCAACACAGTCATATGCGCTCATATGCGGTAACTGCTATATGCATAATGgtaagggg--gctagatttgatcttttat---gatcatgtccttttgcatttattgcagaataaagatgattgtacaagtgctattttgtttttttacaatagaccatgttaatagatgaatacaacagtaaaaaaatgtgtattcttatctgcttattttctttcag
|| |||||  | |||||  |||| ||||| ||| |||||||||||||||| || ||||| |||||||||||||| || || |||||   |||||| |||||| |  |   | |  |    ||| ||||     ||| |     | |  | ||||| |      || || ||| | |||    |||  | | |   | ||                                                                     
CATGATGGCAGTTGGATCTCACGCATTGCGGCTCTACTTGTGGGCGAAGATCCCACACAATCATATGCGCTCATTTGTGGAAACTGTCGTATGCACAATGgtgaatgaatgtttaagcaaatcctttacctgaatctttcaactatatacttatttct-----aacataattttgcaa----tatgctttgtaaatgcag--------------------------------------------------------------------

upper sequence: GLYMA06G07930.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0432g00020.t01 (Vitis vinifera), 5'ss of exon 2
CAAGATGGAGGATGGATTGCACGAATTGCAGCTTTACTTGTGGGCGAAGACCCAACACAGTCATATGCGCTCATATGCGGTAACTGCTATATGCATAATGgtaagggggcta--gatttgatcttttatgatcatgtccttttgcatttattgcagaataaagatgattgtacaagtgctattttgtttttttacaatagaccatgttaatagatgaatacaacagtaaaaaaatgtgtattcttatctgcttattttctttcag
|| ||||| ||||||||||| |||||||| ||  |||||||||| || || |||||| |||| ||||| || ||||| || |||||  ||||||||||||||||| ||  |   ||  | ||| ||                                                                                                       ||  |   || || |  | |  || ||||  | |||
CATGATGGGGGATGGATTGCTCGAATTGCTGCACTACTTGTGGGGGAGGATCCAACAGAGTCTTATGCACTTATATGTGGAAACTGTCATATGCATAATGgtaagtggagtgaggacctcatccttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaagta---gttttgtcctgtttttgtttttgtgcag

upper sequence: GLYMA06G07930.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0215g00090.t01 (Vitis vinifera), 5'ss of exon 5
CAAGATGGAGGATGGATTGCACGAATTGCAGCTTTACTTGTGGGCGAAGACCCAACACAGTCATATGCGCTCATATGCGGTAACTGCTATATGCATAATGgtaagggggcta--gatttgatcttttatgatcatgtccttttgcatttattgcagaataaagatgattgtacaagtgctattttgtttttttacaatagaccatgttaatagatgaatacaacagtaaaaaaatgtgtattcttatctgcttattttctttcag
|| ||||| ||||||||||| |||||||| ||  |||||||||| || || |||||| |||| ||||| || ||||| || |||||  ||||||||||||||||| ||  |   ||  | ||| ||    |  ||||  || ||| |      ||| ||    |   |||| ||     || ||| ||  |  |          |||||||                                                      
CATGATGGGGGATGGATTGCTCGAATTGCTGCACTACTTGTGGGGGAGGATCCAACAGAGTCTTATGCACTTATATGTGGAAACTGTCATATGCATAATGgtaagtggagtgaggacctcatccttacaaa--atgtatttctgctt------caggat---tacttttgttcat-cattacttttttcctccatgtcccctactgttaatt-----------------------------------------------------

upper sequence: GLYMA06G07930.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0033g01150.t01 (Vitis vinifera), 5'ss of exon 6
CAAGATGGAGGATGGATTGCACGAATTGCAGCTTTACTTGTGGGCGAAGACCCAACACAGTCATATGCGCTCATATGCGGTAACTGCTATATGCATAATGgtaagggggctagatttgatcttttatgatcatgtccttttgcatttattgcagaataaagatgattgtacaagtgctattttgtttttttacaatagaccatgttaatagatgaatacaacagtaaaaaaatgtgtattcttatctgcttattttctttcag
 | ||||| ||||||||||| ||||||||||| || |||||||| || || ||||||||||||||||||||||||||||| |||||| ||||||| ||||||||| ||  |||  || |  |  |     ||  |    || ||  | ||  ||  |    ||   |  |   ||     |||| |||  | ||                                                                     
TATGATGGGGGATGGATTGCTCGAATTGCAGCATTGCTTGTGGGTGAGGATCCAACACAGTCATATGCGCTCATATGCGGGAACTGCCATATGCACAATGgtaagtggagtagtattcacatccttaacccacctggacttccaactctt--agttttgtcatatcttcaggggt----ctttggtttggtgcag--------------------------------------------------------------------