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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCGCTCGGTCTACGTAAACATTCAGAAATTTGTGCAGTTTCAGCTAACTGTAAATGTTGTTGCTTTGATCGTCAATTTCTCTTCTGCTTGTTTGACTGgtaatcgtgatgctgcccctgttattatcttcctaatcaaagttatccttttattttatttgaactagtttattagtttttttttgtctcatttaccccctcatcatatatgaattactag

Basic information

species Glycine max
transcript GLYMA06G04900.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G04900.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g10640.1 (Oryza sativa), 5'ss of exon 5
GGCCGCTCGGTCTACGTAAACATTCAGAAATTTGTGCAGTTTCAGCTAACTGTAAATGTTGTTGCTTTGATCGTCAATTTCTCTTCTGCTTGTTTGACTGgta-atcgtgatgctgcccctgttattatcttccta----atcaaagttatccttttattttatttgaactagtttattagtttttttttgtctcatttaccccctcatcatatatgaattactag
|| || || || ||| | || |||||||| ||||||||||||||||| || || ||||| || ||| |||| || || ||||| || ||||| ||||| |||| | |   ||| ||    | ||    || | |||    ||  || | ||  |||  ||    || || ||   | ||  | ||  ||| |   | | ||                         
GGTCGGTCAGTGTACATTAATATTCAGAAGTTTGTGCAGTTTCAGCTGACAGTCAATGTGGTCGCTCTGATAGTGAACTTCTCCTCAGCTTGCTTGACAGgtacagctaaatgttgatgttttttacctcattctactgtatagaattgatagtttcgttccgattaaaataacct-ttgatgttggtttcttgtaataac-------------------------

upper sequence: GLYMA06G04900.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G006977_T01 (Zea mays), 5'ss of exon 5
GGCCGCTCGGTCTACGTAAACATTCAGAAATTTGTGCAGTTTCAGCTAACTGTAAATGTTGTTGCTTTGATCGTCAATTTCTCTTCTGCTTGTTTGACTGgtaa--tcgtgatgctgcccctgttattatcttcctaatcaaagttatccttttattttatttgaactagtttattagtttttttttgtctcatttaccccctcat---catatatg--aattactag-----
|| || || || ||| | ||||||||||| ||||||||||||||||| ||||| ||||| |||||| || | || || ||||| || |||||  |||| ||||    ||  || |||    ||   |  |  |    |       ||    || |   |||    | |    | || |||| |||       || |  | | |  |   |||  |||   ||| ||       
GGTCGATCAGTTTACATCAACATTCAGAAGTTTGTGCAGTTTCAGCTCACTGTCAATGTGGTTGCTCTGGTGGTAAACTTCTCCTCAGCTTGCCTGACAGgtacatccgatatcctgtatatgagttcgtggtttggaaatcctctactacttgagcgtatcctgaatgtactttttgtttatttcataaatatatgtctcattgttcgcattcatgctgattgctgattcag

upper sequence: GLYMA06G04900.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G118919_T01 (Zea mays), 5'ss of exon 3
GGCCGCTCGGTCTACGTAAACATTCAGAAATTTGTGCAGTTTCAGCTAACTGTAAATGTTGTTGCTTTGATCGTCAATTTCTCTTCTGCTTGTTTGACTGgtaatcgtgatgctgcccctgttattatcttcctaatcaaagttatccttttatttt--atttgaactagtttattagtttttttttgtctcatttaccccctcatcatatatgaattactag-------
||||| ||||| ||| | ||||| ||||||||||||||||| ||||| || || || || |||||  | |||||||| |||||||| |||||  |||  |||||     |     | |  | |  |   ||| |    |      |  ||  | | |  || |||| || |  |     ||   |    | | |  ||   ||||| | || ||  |  | |        
GGCCGGTCGGTGTACATCAACATCCAGAAATTTGTGCAGTTCCAGCTGACAGTCAACGTCGTTGCGCTCATCGTCAACTTCTCTTCAGCTTGCCTGATAGgtaaaaaaaaaaac-ctcacgctgctgcgttcatctgtaggtgactgattccagtctgaatctgaaataatagaca---ttgactggagcccgtaaacaaactcataaaatgtgcttgtcgattcatcag

upper sequence: GLYMA06G04900.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G27770.1 (Arabidopsis thaliana), 5'ss of exon 5
GGCCGCTCGGTCTACGTAAACATTCAGAAATTTGTGCAGTTTCAGCTAACTGTAAATGTTGTTGCTTTGATCGTCAATTTCTCTTCTGCTTGTTTGACTGgt-aatcgtgatgctgcccctgttattatcttcctaatcaaagttatccttttattttatttgaactagtttattagtttttttttgtctcatttaccccctcatcatatatgaattactag
||||| || || ||| |||| |||||||||||||| ||||| ||||| || ||||||||||| ||| | || ||||| ||||  || || ||  | |||||| | |    |  |  |   | || || ||||  | |  | | | |||   | |    |||  |||||  || |  |||   ||    || | |          |||               
GGCCGTTCTGTGTACATAAATATTCAGAAATTTGTCCAGTTCCAGCTGACAGTAAATGTTGTGGCTCTTATTGTCAACTTCTTATCAGCCTGCCTCACTGgttagttcccaacccacatttatttttctcttgttcaaaagactaatctcctcaggg-attgcaactaacttctctgttacattgacactaactactgtgggtctcag--------------