1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCTGATTGGGCTGTGCTCTGTGAAGAGATTGGCCTCTGGATACCTGCTCAAGTTTCTAATAAAGAACATGACGACAAACCTGAGGGTGCAGAGGAGTTTGgtaatatcagtttcttcagtcgtaatatccattttctttttctattgtagttttccccttatgcatcacttgagtggtttcccggaatcagtgaacaatgcattatgcatgatagaatctggaagtagtgtgcatgtatattgatttcttgcagaaatttattcttggacttaccaagtatacattctctccag
species | Glycine max |
transcript | GLYMA06G04180.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGTTTCTAATAAAGAACATGACGACAAACCTGAGGGTGCAGAGGAGTTTG AGGAGGAGGTCCTTCCTGGCAGACCCGTTTCACCCGAGTGCCATGCTGAACEST: gi|9203819|gb|BE330043.1|BE330043
genomic: AGTTTCTAATAAAGAACATGACGACAAACCTGAGGGTGCAGAGGAGTTTGgtaatatcag ... ttctctccagAGGAGGAGGTCCTTCCTGGCAGACCCGTTTCACCCGAGTGCCATGCTGAAC
EST: AGTTTCTAATAAAGAACATGACGACAAACCTGAGGGTGCAGAGGAGTTTG AGGAGGAGGTCCTTCCTGGCAGACCCGTTTCACCCGAGTGCCATGCTGAACEST: gi|58021689|gb|CX708430.1|CX708430
genomic: AGTTTCTAATAAAGAACATGACGACAAACCTGAGGGTGCAGAGGAGTTTGgtaatatcag ... ttctctccagAGGAGGAGGTCCTTCCTGGCAGACCCGTTTCACCCGAGTGCCATGCTGAAC
EST: AGTTT-TAATAAAGAACATGACGACAAACTTGAGGGTGCAGAGGAGTTTG AGGAGGAGGTCCTTCCTGGCAGACCCGTTTCACCCGAGTGCCATGCTGAAC
genomic: AGTTTCTAATAAAGAACATGACGACAAACCTGAGGGTGCAGAGGAGTTTGgtaatatcag ... ttctctccagAGGAGGAGGTCCTTCCTGGCAGACCCGTTTCACCCGAGTGCCATGCTGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGATTGGGCTGTGCTCTGTGAAGAGATTGGCCTCTGGATACCTGCTCAAGTTTCTAATAAAGAACATGACGACAAACCTGAGGGTGCAGAGGAGTTTGgtaatatcagtttcttcagtcgtaatatccattttctttttctattgtagttttccccttatgcatcacttgagtggtttcccggaatcagtgaacaatgcattatgcatgatagaatctggaagtagtgtgcatgtatattgatttcttgcagaaatttattcttggacttaccaagtatacattctctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG