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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATCAGAATTCTCCGTCAATTACACCACCCCAACATTGTGCAGTATTATGGCAGTGAAATAgtgagttaattattggttcttgttccaagtatactatactgtttacagaaaaatccaaggatctttgttcttgtgaataagattgaatttgtgacacatcttggttttcag

Basic information

species Glycine max
transcript GLYMA06G03970.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21677595|gb|BQ629946.1|BQ629946
EST:     TCCGTCAATTACACCACCCCAACATTGTGCAGTATTATGGCAGTGAAATA                         GTTGGTGATCGATTGTACATATATATGGAGTATGTTCATCCTGGATCACTT
genomic: TCCGTCAATTACACCACCCCAACATTGTGCAGTATTATGGCAGTGAAATAgtgagttaat ... tggttttcagGTTGGTGATCGATTGTACATATATATGGAGTATGTTCATCCTGGATCACTT
EST: gi|37996722|gb|CF808311.1|CF808311
EST:     TCCGTCAATTACACCACCCCAACATTGTGCAGTATTATGGCAGTGAAATA                         GTTGGTGATCGATTGTACATATATATGGAGTATGTTCATCCTGGATCACTT
genomic: TCCGTCAATTACACCACCCCAACATTGTGCAGTATTATGGCAGTGAAATAgtgagttaat ... tggttttcagGTTGGTGATCGATTGTACATATATATGGAGTATGTTCATCCTGGATCACTT
EST: gi|37996920|gb|CF808509.1|CF808509
EST:     TCCGTCAGTTACTCCACCCCAACATTGTGCAGTATTATGGCAGTGAAATA                         GTTGGTGATCGATTGTACATATATATGGAGTATGTTCATCCTGGATCACTT
genomic: TCCGTCAATTACACCACCCCAACATTGTGCAGTATTATGGCAGTGAAATAgtgagttaat ... tggttttcagGTTGGTGATCGATTGTACATATATATGGAGTATGTTCATCCTGGATCACTT
EST: gi|151399302|gb|EV269173.1|EV269173
EST:     GCAGTATTATGGCAGTGAAATA                         GTTGGTGATCGATTGTACATATATATGGAGTATGTTCATCCTGGATCACTT
genomic: GCAGTATTATGGCAGTGAAATAgtgagttaat ... tggttttcagGTTGGTGATCGATTGTACATATATATGGAGTATGTTCATCCTGGATCACTT