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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGTTCTCCTTTACGGGCCTCCTGGTACTGGTAAAACATTGTTAGCCAGGGCTATTGCCAGTAATATAGATGCTAACTTCCTAAAGgtcagattatgtttcttttataaattctgtgtgctttgaagtcttcttcattgtaaaaattattttgtcttccctttattctgatgtag

Basic information

species Glycine max
transcript GLYMA06G03230.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G03230.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0001g13090.t01 (Vitis vinifera), 5'ss of exon 5
GGTGTTCTCCTTTACGGGCCTCCTGGTACTGGTAAAACATTGTTAGCCAGGGCTATTGCCAGTAATATAGATGCTAACTTCCTAAAGgtcaga-ttatgtttcttttataa-attctg---tgtgctttga------agtcttcttcattgtaaaaattattttgtcttccctttat-tctgat--gtag
|||||||| ||||| ||||||||||||||||| || ||||| ||||| || || |||||||||||||||||||| |||||| | ||||||||| |||   ||  | | |   ||| |    ||| ||||||      | | ||   |    |  ||  |    || ||||  |||   |||| |  ||||
GGTGTTCTTCTTTATGGGCCTCCTGGTACTGGGAAGACATTATTAGCTAGAGCAATTGCCAGTAATATAGATGCCAACTTCTTGAAGgtcagacttacacttggtgtgttgcattttaagatgtactttgatctgagaatttttccctaaatttaatctgcaatgccttcttttttcctctggtttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193644366|gb|FK594171.1|FK594171
EST:     CATTGTTAGCCAGGGCTATTGCCAGTAATATAGATGCTAACTTCCTAAAG                         GTTGTTTCCAGTGCCATAATTGACAAGTACATTGGAGAAAGTGCCAGGTTA
genomic: CATTGTTAGCCAGGGCTATTGCCAGTAATATAGATGCTAACTTCCTAAAGgtcagattat ... tctgatgtagGTTGTTTCCAGTGCCATAATTGACAAGTACATTGGAGAAAGTGCCAGGTTA
EST: gi|193360211|gb|FK327627.1|FK327627
EST:     CATTGTTAGCCAGGGCTATTGCCAGTAATATAGATGCTAACTTCCTAAAG                         GTTGTTTCCAGTGCCATAATTGACAAGTACATTGGAGAAAGTGCCAGGTTA
genomic: CATTGTTAGCCAGGGCTATTGCCAGTAATATAGATGCTAACTTCCTAAAGgtcagattat ... tctgatgtagGTTGTTTCCAGTGCCATAATTGACAAGTACATTGGAGAAAGTGCCAGGTTA
EST: gi|151393977|gb|EV263848.1|EV263848
EST:     CATTGTTAGCTAGGGCTATTGCCAGTAATATAGATGCTAACTTCCTAAAG                         GTTGTTTCCAGTGCCATAATTGACAAGTACATTGGAGAAAGTGCCAGGTTA
genomic: CATTGTTAGCCAGGGCTATTGCCAGTAATATAGATGCTAACTTCCTAAAGgtcagattat ... tctgatgtagGTTGTTTCCAGTGCCATAATTGACAAGTACATTGGAGAAAGTGCCAGGTTA
EST: gi|26058654|gb|CA801568.1|CA801568
EST:     CTAACTTCCTAAAG                         GTTGTTTCCAGTGCCATAATTGACAAGTACATTGGAGAAAGTGCCAGGTTA
genomic: CTAACTTCCTAAAGgtcagattat ... tctgatgtagGTTGTTTCCAGTGCCATAATTGACAAGTACATTGGAGAAAGTGCCAGGTTA
EST: gi|298164161|gb|HO013806.1|HO013806
EST:     CATTGTTAGCCAGGGCTATTGCCAGTAATATAGATGCTAACTTCCTAAAG                         GTTGTTTCCAGTGCCATAATTGACAAGTACATTGGAGAAAGTGCCAGGTTA
genomic: CATTGTTAGCCAGGGCTATTGCCAGTAATATAGATGCTAACTTCCTAAAGgtcagattat ... tctgatgtagGTTGTTTCCAGTGCCATAATTGACAAGTACATTGGAGAAAGTGCCAGGTTA
EST: gi|254346175|gb|GR859788.1|GR859788
EST:     CATTGTTAGCCAGGGCTATTGCCAGTAATATAGATGCTAACTTCCTAAAG                         GTTGTTTCCAGTGCCATAATTGACAAGTACATTGGAGAAAGTGCCAGGTTA
genomic: CATTGTTAGCCAGGGCTATTGCCAGTAATATAGATGCTAACTTCCTAAAGgtcagattat ... tctgatgtagGTTGTTTCCAGTGCCATAATTGACAAGTACATTGGAGAAAGTGCCAGGTTA